ATCOECIS specifications

Information


Unique identifier OMICS_11677
Name ATCOECIS
Interface Web user interface
Restrictions to use None
Input data A GO category of interest or from a user-defined gene set
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants
    • Arabidopsis thaliana

Maintainer


  • person_outline Klaas Vandepoele <>

ATCOECIS article

ATCOECIS citation

2016
PMCID: 5135394

[…] uniquely mapping reads were used for further analysis. differentially expressed genes were identified using the deseq package (anders and huber, 2010). analysis of go categories was performed using atcoecis (vandepoele et al., 2009) and revigo (rrid:scr_005825) (supek et al., 2011). to enrich for biologically relevant changes, probesets with signal log ratio (slr) > 0.6 were selected […]

ATCOECIS institution(s)
Department of Plant Systems Biology, Flanders Institute for Biotechnology, Ghent, Belgium; Department of Plant Biotechnology and Genetics, Ghent University, Ghent, Belgium
ATCOECIS funding source(s)
The Interuniversity Attraction Poles Programme (IUAP VI/25 and VI/33), initiated by the Belgian State, Science Policy Office; postdoctoral fellows of the Research Foundation-Flanders

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