ATGme specifications


Unique identifier OMICS_10071
Name ATGme
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data DNA sequence, codon usage table
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Edward Daniel <>

Publication for ATGme

ATGme in publications

PMCID: 5581930
PMID: 28865429
DOI: 10.1186/s12859-017-1793-7

[…] genome, in the default order specified by ncbi’s standard genetic code definition (fig. ). this is a common format and the table can be copied and directly pasted in a number of applications such as atgme [] and rare codon calculator: %minmax []; several such tools are linked directly from the database webpage. each search will produce two graphs, one plotting the gc percent frequency […]

PMCID: 3699391
PMID: 23799937
DOI: 10.1186/1475-2859-12-59

[…] pklvtc. pklac1 was digested with hindiii and xhoi, followed by treatment with klenow enzyme and also with t4 dna ligase to destroy the signal secretion sequence of the alpha mating factor. the atgme gene was released from the pgem vector by cutting with xhoi and stui and inserted into the sali and stui sites from pklac1 α-mating factor free vector generating the vector pkljc/gme. […]

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ATGme institution(s)
Biocenter Oulu, Faculty of Biochemistry and Molecular Medicine, Structural Biochemistry, University of Oulu, Oulu, Finland; Feinberg School of Medicine, Northwestern University, Chicago, IL, USA; Biocenter Oulu, Laboratory of Developmental Biology, InfoTech Oulu, Center for Cell Matrix Research, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 5A, Oulu, Finland
ATGme funding source(s)
The Academy of Finland within the FiDiPro Program (SQ) (263246)

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