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ATGme specifications


Unique identifier OMICS_10071
Name ATGme
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data DNA sequence, codon usage table
Programming languages Javascript
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Edward Daniel

Publication for ATGme

ATGme citations


A new and updated resource for codon usage tables

BMC Bioinformatics
PMCID: 5581930
PMID: 28865429
DOI: 10.1186/s12859-017-1793-7

[…] genome, in the default order specified by NCBI’s standard genetic code definition (Fig. ). This is a common format and the table can be copied and directly pasted in a number of applications such as ATGme [] and Rare Codon Calculator: %MinMax []; several such tools are linked directly from the database webpage. Each search will produce two graphs, one plotting the GC percent frequency of the orga […]


Manipulation of the Rice L Galactose Pathway: Evaluation of the Effects of Transgene Overexpression on Ascorbate Accumulation and Abiotic Stress Tolerance

PLoS One
PMCID: 4418601
PMID: 25938231
DOI: 10.1371/journal.pone.0125870

[…] eatment, the relative membrane ion leakage of wild-type plants increased up to 67%, significantly higher (p<0.01) than that of transgenic plants. The results indicated that overexpression of AtGGP or AtGME could significantly improve rice seedling salt tolerance. […]


Metabolic engineering of Kluyveromyces lactis for L ascorbic acid (vitamin C) biosynthesis

Microb Cell Fact
PMCID: 3699391
PMID: 23799937
DOI: 10.1186/1475-2859-12-59

[…] was purified using the GenElute™ PCR Clean-Up Kit (Sigma-Aldrich™) and cloned into pGEM T Easy vector (Promega, Madison, WI, USA). The vectors pKlJC/GME (9215 bp) and pKlVTc (13827 bp) harboring the AtGME and AtVTC2/AtVTC4 genes respectively, plus pGEM/Act1 were used to construct the standard curves for DNA absolute quantification of the yeast transformants. Genomic DNA from each strain and the v […]


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ATGme institution(s)
Biocenter Oulu, Faculty of Biochemistry and Molecular Medicine, Structural Biochemistry, University of Oulu, Oulu, Finland; Feinberg School of Medicine, Northwestern University, Chicago, IL, USA; Biocenter Oulu, Laboratory of Developmental Biology, InfoTech Oulu, Center for Cell Matrix Research, Faculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 5A, Oulu, Finland
ATGme funding source(s)
The Academy of Finland within the FiDiPro Program (SQ) (263246)

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