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Atlas2

A next-generation sequencing suite of variant analysis tools specializing in the separation of true SNPs and insertions and deletions (indels) from sequencing and mapping errors in Whole Exome Capture Sequencing (WECS) data. SNPs may be called using the Atlas-SNP2 application and indels may be called using the Atlas-Indel2 application.

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Atlas2 forum

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Atlas2 classification

Atlas2 specifications

Software type:
Framework/Library
Restrictions to use:
None
Input format:
BAM, FASTA
Output format:
VCF
Parallelization:
MapReduce
Version:
1.4.3
High performance computing:
Yes
Interface:
Command line interface
Input data:
Sequence alignment data, reference genome data
Output data:
Variant calls
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

Atlas2 distribution

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No versioning.

Credits

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Publications

Institution(s)

The Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA

Link to literature

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