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AtlasRDF

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Query the Gene Expression AtlasRDF data at the European Bioinformatics Institute using genes, experimental factors (such as disease, cell type, compound treatments), pathways and proteins. AtlasRDF contains a function to perform an enrichment of your gene list across Experimental Factor Ontology (EFO) using the Atlas background set.

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AtlasRDF classification

AtlasRDF specifications

Unique identifier:
OMICS_15775
Interface:
Command line interface
Input data:
A gene list.
Operating system:
Unix/Linux, Mac OS, Windows
License:
Apache License version 2.0
Version:
1.3
Requirements:
hash, SPARQL
Software type:
Package/Module
Restrictions to use:
None
Output data:
A list of experimental factors for which these genes are enriched.
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

AtlasRDF distribution

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AtlasRDF support

Documentation

Maintainer

  • Simon Jupp <>

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