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AtlasT4SS specifications

Information


Unique identifier OMICS_05159
Name AtlasT4SS
Restrictions to use None
Maintained Yes

Publication for AtlasT4SS

AtlasT4SS citations

 (3)
library_books

Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC 2 and OKP B 6 Beta Lactamases Producer Harboring Two Drug Resistance Plasmids from Southeast Brazil

2018
Front Microbiol
PMCID: 5820359
PMID: 29503635
DOI: 10.3389/fmicb.2018.00220

[…] were detected by tRNAscan-SE (Lowe and Eddy, ) and the annotation of ribosomal RNA genes was carried out by RNAmmer (Lagesen et al., ).Further bioinformatics analyses included BLAST searches against AtlasT4SS database (Souza et al., )/Resfinder database (Zankari et al., )/ARDB-Antibiotic Resistance Genes Database (Liu and Pop, )/Comprehensive Antibiotic Resistance Database (Jia et al., ) and Viru […]

library_books

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

2014
Nucleic Acids Res
PMCID: 4027160
PMID: 24623814
DOI: 10.1093/nar/gku194

[…] T4SS. The most recent and comprehensive T4SS database to date, SecReT4 (), contains 811 T4SS present on 638 different replicons. SecReT4 does not contain Cyanobacteria or Archaea T4SS. Another tool, AtlasT4SS (), contains information from 70 genomes (58 Bacteria, 1 Archaea and 11 plasmids) and contains 134 clusters of orthologs. Importantly, CONJdb includes information on the T4SS class and on th […]

library_books

Comparative analysis of the complete genome of KPC 2 producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

2014
BMC Genomics
PMCID: 3904158
PMID: 24450656
DOI: 10.1186/1471-2164-15-54

[…] K2044 [GenBank:AP006725] were downloaded from the NCBI website and used as input to Mauve.Phage-related sequences were searched using PHAST [], while T4SS-related sequences were scanned for using the AtlasT4SS database [].The investigation of the resistance and virulence repertoire was facilitated by BLASTX sequence comparison to the Antibiotic Resistance Genes Database [], as well as throughout t […]

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AtlasT4SS institution(s)
The National Laboratory for Scientific Computing LNCC, Getúlio Vargas, Petrópolis, Rio de Janeiro, Brazil

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