AtmiRNET specifications

Information


Unique identifier OMICS_08477
Name AtmiRNET
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Wen-Chi Chang

Publication for AtmiRNET

AtmiRNET citations

 (2)
library_books

Identifying and Characterizing the Circular RNAs during the Lifespan of Arabidopsis Leaves

2017
Front Plant Sci
PMCID: 5517402
PMID: 28785273
DOI: 10.3389/fpls.2017.01278

[…] me duplex having only perfect matches ≥0.7 for mRNA and a score ≤6 and ratio of the free energy of the duplex to the free energy of the same duplex having only perfect matches ≥0.6 for circRNA; (iii) AtmiRNET () using a score ≥180 for mRNA and a score ≥140 for circRNA. The targets of miRNAs were selected based on age dependent expression changes and having anti-correlation with miRNA (Spearman’s c […]

library_books

Methods of MicroRNA Promoter Prediction and Transcription Factor Mediated Regulatory Network

2017
Biomed Res Int
PMCID: 5474535
PMID: 28656148
DOI: 10.1155/2017/7049406

[…] v3.0 is available at http://www.microrna.gr/mirgen.The above databases are all about human and mouse miRNAs. To provide comprehensive information about plant miRNA genes, Chien et al. established the AtmiRNET database []. They used high-throughput next-generation sequencing datasets to construct SVM prediction model to predict Arabidopsis miRNA TSSs. This database also provides the transcriptional […]

AtmiRNET institution(s)
College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan, Taiwan
AtmiRNET funding source(s)
This work was supported by Innovative Translational Agricultural Research Grant of Academia Sinica, Ministry of Science and Technology (MOST 103-2311-B-006-001) and National Science Council (NSC 102-2313-B-006-004) of the Republic of China.

AtmiRNET reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AtmiRNET