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A resource geared towards plant scientists for reconstructing regulatory networks of Arabidopsis miRNAs. By means of highlighted miRNA studies in target recognition, functional enrichment of target genes, promoter identification, and detection of cis- and trans- elements, AtmiRNET allows users to explore mechanisms of transcriptional regulation and miRNA functions in Arabidopsis thaliana, which are rarely investigated so far.

Interface:
Web user interface
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
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Maintainer

  • Wen-Chi Chang <sarah321 at mail.ncku.edu.tw>

Institution(s)

College of Biosciences and Biotechnology, Institute of Tropical Plant Sciences, National Cheng Kung University, Tainan 70101, Taiwan

Funding source(s)

This work was supported by Innovative Translational Agricultural Research Grant of Academia Sinica, Ministry of Science and Technology (MOST 103-2311-B-006-001) and National Science Council (NSC 102-2313-B-006-004) of the Republic of China.

  • (Chien et al., 2015) AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. Database.
    PMID: 25972521
  • Plants
    • Arabidopsis thaliana
  • (Alexiou et al., 2009) Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinformatics.
    PMID: 19789267
  • (Ding et al., 2012) Finding microRNA targets in plants: current status and perspectives. Genomics, proteomics & bioinformatics.
    PMID: 23200136
  • (Majoros et al., 2013) MicroRNA target site identification by integrating sequence and binding information. Nature methods.
    PMID: 23708386
  • (Mendes et al., 2009) Current tools for the identification of miRNA genes and their targets. Nucleic acids research.
    PMID: 19295136
  • (Akhtar et al., 2016) Bioinformatic tools for microRNA dissection. Nucleic acids research.
    PMID: 26578605

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