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AtPID specifications


Unique identifier OMICS_01898
Name AtPID
Alternative name Arabidopsis thaliana Protein Interactome Database
Restrictions to use Academic or non-commercial use
Community driven No
Data access File download, Browse
User data submission Allowed
Version 5.0
Maintained No


  • Plants and Fungi
    • Arabidopsis thaliana



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Publications for Arabidopsis thaliana Protein Interactome Database

AtPID citations


Prediction of cassava protein interactome based on interolog method

Sci Rep
PMCID: 5722940
PMID: 29222529
DOI: 10.1038/s41598-017-17633-2

[…] The protein information of these template plants was obtained from Phytozome V9 and Uniprot databases, and the protein interaction information was collected from seven databases; IntAct, MINT, AtPIN, AtPID, PAIR, APID, and PRIN (Fig. ). To find protein orthologs in cassava, we performed BLASTp search against the cassava genome sequence. The cassava orthologous proteins were identified if the ident […]


Probing the Unknowns in Cytokinin Mediated Immune Defense in Arabidopsis with Systems Biology Approaches

Bioinform Biol Insights
PMCID: 3929428
PMID: 24558299
DOI: 10.4137/BBI.S13462.

[…] hes has opened up new avenues in plant immunity. Systems biology has high potential in resolving the complex hormonal interactions in plant immunity. To this end, public PPI databases such as STRING, AtPID, and Plant Interactome Database can be exploited for mapping the basal Arabidopsis interactome (). Moreover, quantitative transcriptome repositories such as GEO, Genevestigator, and Array Expres […]


Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network

PLoS One
PMCID: 3031521
PMID: 21297957
DOI: 10.1371/journal.pone.0016022

[…] nd 615 overlapped proteins from four bioinformatical predictors (s1, s2, s3, and s5) (). Such CoreMitoP set can be queried from our Arabidopsis protein interaction database ( and provides rich information to facilitate the researches for better understanding of mitochondrial functions. […]


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AtPID institution(s)
Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai, China; School of Finance and Statistics, East China Normal University, Shanghai, China
AtPID funding source(s)
National Key Basic Research and Development Plan 973 (2013CB127005), National High Technology Research and Development Program of China (2015AA020108), National Science Foundation of China (31171264, 31401133, 31671377), 111 Project (B14019), Science and Technology Commission of Shanghai Municipality (14YF1404400), Ernst Mach-Stipendien Eurasia-Pacific Uninet programme, China Postdoctoral Science Foundation funded project and the Supercomputer Center of East China Normal University.

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