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AtPIN specifications

Information


Unique identifier OMICS_02867
Name AtPIN
Alternative name Arabidopsis thaliana Protein Interaction Network
Restrictions to use None
Version 2.6.70
Maintained Yes

Taxon


  • Plants and Fungi
    • Arabidopsis thaliana

Maintainer


  • person_outline Marcelo M. Brandão

Publication for Arabidopsis thaliana Protein Interaction Network

AtPIN citations

 (16)
library_books

Prediction of cassava protein interactome based on interolog method

2017
Sci Rep
PMCID: 5722940
PMID: 29222529
DOI: 10.1038/s41598-017-17633-2

[…] iana). The protein information of these template plants was obtained from Phytozome V9 and Uniprot databases, and the protein interaction information was collected from seven databases; IntAct, MINT, AtPIN, AtPID, PAIR, APID, and PRIN (Fig. ). To find protein orthologs in cassava, we performed BLASTp search against the cassava genome sequence. The cassava orthologous proteins were identified if th […]

library_books

Genome wide analysis and transcriptomic profiling of the auxin biosynthesis, transport and signaling family genes in moso bamboo (Phyllostachys heterocycla)

2017
BMC Genomics
PMCID: 5683460
PMID: 29132316
DOI: 10.1186/s12864-017-4250-0

[…] rough auxin transport, a process which is controlled mainly by auxin efflux transporter PIN/PILS and influx transporter AUX1/LAX [, ]. To identify the PIN and AUX1/LAX members in moso bamboo, we used AtPIN/PILS and AtAUX1/LAX proteins from Arabidopsis as BLASTP queries to search for the moso bamboo orthologs in the bambooGDB. The Hidden Markov model (HMM) profiles (Pfam 01490: transmembrane amino […]

library_books

Two Paralogous Genes Encoding Auxin Efflux Carrier Differentially Expressed in Bitter Gourd (Momordica charantia)

2017
Int J Mol Sci
PMCID: 5713312
PMID: 29113110
DOI: 10.3390/ijms18112343

[…] To isolate the fruit-related auxin efflux carrier genes, the cDNA library constructed by poly(A)+ RNA extracted from fruit of bitter gourd was screened using Arabidopsis AtPIN1 and AtPIN2 fragments as probes. Among the cDNA clones obtained, pMAEC28, pMAEC43 and pMAEC93 were selected for complete nucleotide sequence analysis. Properties of these three cDNAs and deduced […]

call_split

Genome wide identification and expression analysis of ClLAX, ClPIN and ClABCB genes families in Citrullus lanatus under various abiotic stresses and grafting

2017
BMC Genet
PMCID: 5384148
PMID: 28388893
DOI: 10.1186/s12863-017-0500-z
call_split See protocol

[…] somal position. The alignment file of LAX, PIN and ABCB family proteins in watermelon and Arabidopsis was generated by ClustalW program with the default parameters. The amino acid sequences of AtLAX, AtPIN and AtABCB proteins were obtained from Yue et al. []. Phylogenetic tree was performed by MEGA6.0 (http://www.megasoftware.net/) using the neighbor-joining (NJ) method with the p-distance and com […]

library_books

Genome wide analysis of auxin transport genes identifies the hormone responsive patterns associated with leafy head formation in Chinese cabbage

2017
Sci Rep
PMCID: 5294403
PMID: 28169368
DOI: 10.1038/srep42229

[…] To identify the AUX/LAX, PIN, and PGP genes in Chinese cabbage, the genome sequences of Chinese cabbage were retrieved from BRAD (http://brassicadb.org/brad/). Gene sequences of AtAUX/LAX, AtPIN and AtPGP genes were obtained from TAIR (http://arabidopsis.org/index.jsp), and these sequences served as seeds to obtain the target sequence in the B. rapa genome using BLAST v2.2.27+. Then, HM […]

library_books

Plant genome and transcriptome annotations: from misconceptions to simple solutions

2017
Brief Bioinform
PMCID: 5952960
PMID: 28062412
DOI: 10.1093/bib/bbw135

[…] ins. The data repositories of TAIR (Arabidopsis.org) contain such an approach, as well as links to a number of protein interaction resources such as the Arabidopsis interactions viewer [], IntAct [], AtPIN [] and ANAP [] (). In addition, GabiPD [] and PhosPhAt [] databases hold some information on kinases and their phosphorylation targets, while in the case of membrane proteins, the Membrane-based […]

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AtPIN institution(s)
Departamento de Genética, Escola Superior de Agricultura Luiz de Queiroz, Universidade de São Paulo, Piracicaba, SP, Brazil

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