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Publication for ATPint
A genome wide structure based survey of nucleotide binding proteins in M. tuberculosis
[…] another in-house algorithm called PocketAlign. Pymol (version 1.2r1 from www.pymol.org) was used for structural analyses and generating images. Sequence-based ATP site prediction tools NsitePred and ATPint were used for comparing with our site-based NTP predictions. Tuberculist database was used for comparing the annotations, and KEGG mapper– was used for highlighting the pathway enrichment. […]
3D QSAR and Molecular Docking Studies on the TcPMCA1 Mediated Detoxification of Scopoletin and Coumarin Derivatives
[…] omain were estimated using Phobius (Available online: http://phobius.sbc.su.se/), Calmodulin Target Database (Available online: http://calcium.uhnres.utoronto.ca/ctdb/pub_pages/search/index.htm), and ATPint (Available online: http://www.imtech.res.in/raghava/atpint/submit.html) servers. Signal peptides were predicted using Signa1P 3.0 (Available online: http://www.cbs.dtu.dk/service/SignalP/) . […]
Structure based modification of Bluetongue virus helicase protein VP6 to produce a viable VP6 truncated BTV
[…] Previous in vitro studies showed that this region of d2VP6 contains ATP-binding/ATPase motif , suggesting that d2BTV could not replicate possibly due to loss of ATPase activity. However, the program ATPint, which predicts ATP-interacting residues, (http://www.imtech.res.in/raghava/atpint/), suggests that the 10 residues in d2VP6, which included the 5 linker residues inserted into the truncated lo […]
The role of CDK5 and GSK3B kinases in hyperphosphorylation of microtubule associated protein tau (MAPT) in Alzheimer's disease
[…] binding sites is essential for analyzing the phosphorylation process and function of the particular protein. ATP interacting residues in the CDK5 and GSK3B protein kinases were predicted by using ATPint server. The numbers of ATP interacting residues in CDK5 were 70 and in GSK3B were 102. ATP binding pockets were located around the active sites of the both protein kinases. The predicted ATP […]
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