ATPsite specifications

Information


Unique identifier OMICS_25012
Name ATPsite
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Some PSSM profile, sequence descriptors, conservation scores, and predicted secondary structure, relative solvent accessibility (RSA), and dihedral angles.
Operating system Unix/Linux
Computer skills Advanced
Maintained No

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Publication for ATPsite

ATPsite in publications

 (2)
PMCID: 5114821
PMID: 27855637
DOI: 10.1186/s12859-016-1348-3

[…] targetcom method achieves an overall accuracy of 97.17% and mcc value of 0.58 and the proposed targetseq method achieves an overall accuracy of 97.14% and mcc value of 0.48 on atp ligand. the atpsite method [] reported an overall accuracy of 96.2% and mcc value of 0.43 which is lower than the proposed methods. the nsitepred method [] predicted the binding site for several nucleotides. […]

PMCID: 3424114
PMID: 22651691
DOI: 10.1186/1471-2105-13-118

[…] that evolutionary information was critical for distinguishing protein-atp binding residues from conventional residues of protein sequence. kurgan et.al developed a sequence based predictor called atpsite for predicting protein-atp binding sites and achieved very promising results []. in this paper, we followed these pioneer studies aiming to discover novel discriminative features around […]


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ATPsite institution(s)
Department of Electrical and Computer Engineering, University of Alberta, Edmonton, AB, Canada
ATPsite funding source(s)
Supported in part by the NSERC Discovery grant, by the Alberta Ingenuity and iCORE scholarship in ICT, and by the Izaak Walton Killam Memorial scholarship.

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