aTRAM specifications


Unique identifier OMICS_26264
Name aTRAM
Alternative name automated Target Restricted Assembly Method
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Version 2.0
Stability Alpha
Requirements appdirs, asteroid, autopep8, flake8, hypothesis, isort, jedi, lazy-object-proxy, mccabe, numpy, packaging, pep257, psutil, py, pycodestyle, pydocstyle, pyflakes, pylama, pylint, pyparsing, pytest, six, snowballstemmer, wrapt, biopython
Maintained Yes



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  • person_outline Julie Allen <>

Publication for automated Target Restricted Assembly Method

aTRAM institution(s)
Illinois Natural History Survey, University of Illinois, Champaign, IL, USA; Department of Botany and Beaty Biodiversity Centre, University of British Columbia, Vancouver, BC, Canada
aTRAM funding source(s)
Supported by the National Science Foundation Grants [DEB-1050706, DEB-0612938, and DEB-1239788] and by Genome Canada [Project 168BIO]; and Natural Sciences and Engineering Research Council of Canada [Discovery Grant 298148].

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