ATRHUNTER statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ATRHUNTER

Tool usage distribution map

This map represents all the scientific publications referring to ATRHUNTER per scientific context
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Associated diseases


Popular tool citations

chevron_left Microsatellite detection Tandem repeat prediction chevron_right
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ATRHUNTER specifications


Unique identifier OMICS_00102
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Ydo Wexler

Publication for ATRHUNTER

ATRHUNTER citations


Probabilistic approaches to alignment with tandem repeats

PMCID: 3975930
PMID: 24580741
DOI: 10.1186/1748-7188-9-3

[…] vement, with the best performing algorithm reducing the error rate by 37% compared to the baseline. It would be interesting to explore other programs for detecting tandem repeats, such as mreps [] or ATRhunter [].In addition to the baseline three-state model, we have compared our approach to other alignment programs Context [] and Muscle []. The Context program, which uses context-sensitive indels […]


Tandem repeats discovery service (TReaDS) applied to finding novel cis acting factors in repeat expansion diseases

BMC Bioinformatics
PMCID: 3303744
PMID: 22536970
DOI: 10.1186/1471-2105-13-S4-S3

[…] -trivial algorithms for finding TRs, even when mutations occur with non-negligible probability. Tandem Repeat Finder (TRF) [], CRISPRFinder [], mreps [], Reputer [], Approximate Tandem Repeat Hunter (ATRHunter) [], TandemSWAN [], and Tread [] are some examples of currently operational systems that can be accessed via a web interface.Comparative studies [,], for the case of short TRs with high perc […]

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ATRHUNTER institution(s)
Computer Science Department, Technion, Technion Campus, Haifa, Israel; Agilent Laboratories and Computer Science Department, Technion, Haifa, Israel; Food and Biotechnology Department, Technion, Haifa, Israel


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