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ATRHUNTER specifications

Information


Unique identifier OMICS_00102
Name ATRHUNTER
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Ydo Wexler <>

Publication for ATRHUNTER

ATRHUNTER in publications

 (4)
PMCID: 5274682
PMID: 28182099
DOI: 10.1155/2017/7949287

[…] statistically significant pairwise similarity, these approaches are unable to find the latent periodicity. first of all, it involves algorithms and programs, such as trf [], mreps [], trstalker [], atrhunter [], t-reks [], imex [, ], crisprs [], swan [], and some others [, ], because similarity between the different periods is very low in case of latent periodicity. this leads to the lack […]

PMCID: 3975930
PMID: 24580741
DOI: 10.1186/1748-7188-9-3

[…] with the best performing algorithm reducing the error rate by 37% compared to the baseline. it would be interesting to explore other programs for detecting tandem repeats, such as mreps [] or atrhunter []., in addition to the baseline three-state model, we have compared our approach to other alignment programs context [] and muscle []. the context program, which uses context-sensitive […]

PMCID: 3503616
PMID: 22827843
DOI: 10.1186/1471-2180-12-149

[…] exact-repeat motifs) using the “ssr” computer program [,], and for non-perfect ssr (np-ssr, i.e. non-exact repeat motifs) using the “atr hunter” computer program ( http://bioinfo.cs.technion.ac.il/atrhunter/atrhunter.htm[]). perfect ssr included mononucleotide repeats (mnr) with longer than 5-bp repeats, and large ssr with motif size ≥3 bp repeated more than twice. np-ssr included only ssr […]

PMCID: 3303744
PMID: 22536970
DOI: 10.1186/1471-2105-13-S4-S3

[…] algorithms for finding trs, even when mutations occur with non-negligible probability. tandem repeat finder (trf) [], crisprfinder [], mreps [], reputer [], approximate tandem repeat hunter (atrhunter) [], tandemswan [], and tread [] are some examples of currently operational systems that can be accessed via a web interface., comparative studies [,], for the case of short trs with high […]


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ATRHUNTER institution(s)
Computer Science Department, Technion, Technion Campus, Haifa, Israel; Agilent Laboratories and Computer Science Department, Technion, Haifa, Israel; Food and Biotechnology Department, Technion, Haifa, Israel

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