ATRHUNTER statistics

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Microsatellite detection Tandem repeat prediction

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ATRHUNTER specifications

Web

Information

Unique identifier	OMICS_00102
Name	ATRHUNTER
Interface	Web user interface
Restrictions to use	None
Computer skills	Basic
Stability	Stable
Maintained	Yes

Maintainer

Ydo Wexler

Publication for ATRHUNTER

Finding approximate tandem repeats in genomic sequences.

2005 J Comput Biol

PMID: 16201913

ATRHUNTER citations

(2)

Probabilistic approaches to alignment with tandem repeats

2014

PMCID: 3975930

PMID: 24580741

DOI: 10.1186/1748-7188-9-3

[…] vement, with the best performing algorithm reducing the error rate by 37% compared to the baseline. It would be interesting to explore other programs for detecting tandem repeats, such as mreps [] or ATRhunter [].In addition to the baseline three-state model, we have compared our approach to other alignment programs Context [] and Muscle []. The Context program, which uses context-sensitive indels […]

Tandem repeats discovery service (TReaDS) applied to finding novel cis acting factors in repeat expansion diseases

2012

BMC Bioinformatics

PMCID: 3303744

PMID: 22536970

DOI: 10.1186/1471-2105-13-S4-S3

[…] -trivial algorithms for finding TRs, even when mutations occur with non-negligible probability. Tandem Repeat Finder (TRF) [], CRISPRFinder [], mreps [], Reputer [], Approximate Tandem Repeat Hunter (ATRHunter) [], TandemSWAN [], and Tread [] are some examples of currently operational systems that can be accessed via a web interface.Comparative studies [,], for the case of short TRs with high perc […]

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