ATRHUNTER specifications

Web

Information

Unique identifier OMICS_00102
Name ATRHUNTER
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer

  • person_outline Ydo Wexler

Publication for ATRHUNTER

ATRHUNTER citations

 (2)
library_books

Probabilistic approaches to alignment with tandem repeats

2014
PMCID: 3975930
PMID: 24580741
DOI: 10.1186/1748-7188-9-3

[…] vement, with the best performing algorithm reducing the error rate by 37% compared to the baseline. It would be interesting to explore other programs for detecting tandem repeats, such as mreps [] or ATRhunter [].In addition to the baseline three-state model, we have compared our approach to other alignment programs Context [] and Muscle []. The Context program, which uses context-sensitive indels […]

library_books

Tandem repeats discovery service (TReaDS) applied to finding novel cis acting factors in repeat expansion diseases

2012
BMC Bioinformatics
PMCID: 3303744
PMID: 22536970
DOI: 10.1186/1471-2105-13-S4-S3

[…] -trivial algorithms for finding TRs, even when mutations occur with non-negligible probability. Tandem Repeat Finder (TRF) [], CRISPRFinder [], mreps [], Reputer [], Approximate Tandem Repeat Hunter (ATRHunter) [], TandemSWAN [], and Tread [] are some examples of currently operational systems that can be accessed via a web interface.Comparative studies [,], for the case of short TRs with high perc […]

ATRHUNTER institution(s)
Computer Science Department, Technion, Technion Campus, Haifa, Israel; Agilent Laboratories and Computer Science Department, Technion, Haifa, Israel; Food and Biotechnology Department, Technion, Haifa, Israel

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