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  4. Repetitive DNA
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Detects and displays approximate tandem repeats in genomic sequences. ATRHUNTER is based on a flexible statistical model which allows a wide range of definitions of approximate tandem repeats.

Specifications

Interface:
Web user interface
Restrictions to use:
None
Computer skills:
Basic
Stability:
Stable
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Credits

Institution(s)

Computer Science Department, Technion, Technion Campus, Haifa, 32000, Israel; Agilent Laboratories and Computer Science Department, Technion, Haifa, 32000, Israel; Food and Biotechnology Department, Technion, Haifa, 32000, Israel

Publications

  • (Wexler et al., 2005) Finding approximate tandem repeats in genomic sequences. Journal of computational biology.
    PMID: 16201913

Classification

Literature

  • (Treangen and Salzberg, 2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nature reviews Genetics.
    PMID: 22124482
  • (Cao et al., 2014) Sequencing technologies and tools for short tandem repeat variation detection. Briefings in bioinformatics.
    PMID: 24504770

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