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|Alternative name||Arabidopsis Transcriptional Regulatory Map|
|Interface||Web user interface|
|Restrictions to use||None|
- person_outline Ge Gao
Publication for Arabidopsis Transcriptional Regulatory Map
The founder cell transcriptome in the Arabidopsis apetala1 cauliflower inflorescence meristem
[…] Benjamini and Hochberg correction at a significance level set to a value of 0.05 in our analyses. To construct the transcriptional network within the DRNL-marked founder-cell population, we used the Arabidopsis Transcriptional Regulatory Map (ATRM) dataset , supplemented with some additional gene–gene interactions from the literature. Transcription factors from the transcriptome dataset that we […]
Differential Coexpression Analysis Reveals Extensive Rewiring of Arabidopsis Gene Coexpression in Response to Pseudomonas syringae Infection
[…] e known regulatory network data available in public databases.After removing redundant interactions, we collected 50,824 TF-target binary interactions between 529 TFs and 22,793 target genes from the Arabidopsis Transcriptional Regulatory Map (ATRM), AGRIS and AthaMap (). In total, 13,879 interactions between 333 TFs and 5,371 targets were retained for further analysis by filtering out stably expr […]
Transcriptome Analysis of Soybean Leaf Abscission Identifies Transcriptional Regulators of Organ Polarity and Cell Fate
[…] an polarity, lateral organ growth and cell fate. The association of these TFs with organ polarity and boundary definition was further substantiated in the transcriptional networks generated using the ATRM data set (Jin et al., ), which suggests that these TFs may play a role in defining the separation layer within the multilayer LAZ. The most prominent TFs associated with each of the phases of abs […]
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