ATSAS specifications

Information


Unique identifier OMICS_20488
Name ATSAS
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 2.8.3
Stability Stable
Registration required Yes
Maintained Yes

Subtools


  • BUNCH
  • CHROMIXS
  • CRYSON
  • DAMAVER
  • DATtools
  • GLOBSYMM
  • GNOM
  • MASSHA
  • MIXTURE
  • OLIGOMER
  • PRIMUS
  • SUPCOMB

Maintainers


  • person_outline Dmitri I. Svergun <>
  • person_outline Maxim Petoukhov <>
  • person_outline Daniel Franke <>

Information


Unique identifier OMICS_20488
Name ATSAS
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 2.8.3
Stability Stable
Registration required Yes
Maintained Yes

Subtools


  • BUNCH
  • CHROMIXS
  • CRYSON
  • DAMAVER
  • DATtools
  • GLOBSYMM
  • GNOM
  • MASSHA
  • MIXTURE
  • OLIGOMER
  • PRIMUS
  • SUPCOMB

Versioning


Add your version

Maintainers


  • person_outline Dmitri I. Svergun <>
  • person_outline Maxim Petoukhov <>
  • person_outline Daniel Franke <>

Publications for ATSAS

ATSAS in publications

 (475)
PMCID: 5951799
PMID: 29760474
DOI: 10.1038/s41467-018-04300-x

[…] 2% glycerol were incubated with g2 product at 0.625, 1.25, and 2.5 mm before data collection for 30 min. data were processed and merged using standard procedures by the program package scåter and primus. concentration dependent effects were not observed by comparing the curves obtained from the three different concentrations. scattering curves at multiple concentrations were then scaled […]

PMCID: 5940760
PMID: 29739979
DOI: 10.1038/s41598-018-25355-2

[…] be used to give an estimate of the mm, mmqp, and is described here (see below). the mmqp method is not to be confused with the ‘rule-of-thumb’ mm estimates obtained from datporod as implemented in atsas program suite which applies additional corrections to approximate the porod volume, vp (wherein mm ~ vp/1.6). more recently, a classification-based approach, size&shape was also proposed. […]

PMCID: 5902578
PMID: 29662162
DOI: 10.1038/s41467-018-03946-x

[…] and a two-dimensional pi scx:4300 princeton instruments ccd detector. the scattering patterns were recorded with a 180-min exposure time (1080 frames, each 10 s). all saxs data was analyzed with atsas (version 2.5). the data was processed with the saxsquant software (version 3.9). the forward scattering, i(0), rg, dmax, desmearing and the inter-atomic distance distribution functions, p (r), […]

PMCID: 5924885
PMID: 29632185
DOI: 10.1073/pnas.1716109115

[…] second for the duration of the size exclusion run. buffer subtraction was performed by averaging 50 frames either side of the peak. all subsequent data processing steps were performed using the atsas data analysis software 2.8.2. the program datgnom () was used to generate the pair distribution function [p(r)] for each isoform and to determine dmax and rg from the scattering curves [i(q) […]

PMCID: 5890256
PMID: 29632331
DOI: 10.1038/s41467-018-03699-7

[…] evolves from 1.5 ± 0.3 and 1.3 ± 0.3 nm to 1.6 ± 0.4 nm, when the ligand ratio increases.fig. 3, all models obtained from sans were then directly compared to dpd simulation (fig. ). the program supcomb was used to superimpose the sans reconstructions onto the simulation models in 3d. the program represents each input structure as an ensemble of points, and then minimizes a normalized […]


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ATSAS institution(s)
European Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany; Federal Scientific Research Centre ‘Crystallography and Photonics’ of Russian Academy of Sciences, Moscow, Russia; N. Frumkin Institute of Physical Chemistry and Electrochemistry RAS, Moscow, Russia; N.N. Semenov Institute of Chemical Physics of Russian Academy of Sciences, Moscow, Russia; National Research Centre ‘Kurchatov Institute’, Moscow, Russia; Department of Chemical Engineering, Stanford University, Stanford, CA, USA
ATSAS funding source(s)
Supported by FP7 Research Infrastructures (award Nos. Biostruct-X [283570], IDPbyNMR [264257], iNEXT [653706]); BMBF (award Nos. BIOSCAT [05K12YE1], TT-SAS [05K16YEA]); HFSP (award No. RGP0017/2012); DFG/GACR (award No. 9/5-1).

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