ATSAS statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ATSAS
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Protocols

ATSAS specifications

Information


Unique identifier OMICS_20488
Name ATSAS
Software type Toolkit/Suite
Interface Web user interface
Restrictions to use Academic or non-commercial use
Computer skills Basic
Version 2.8.3
Stability Stable
Registration required Yes
Maintained Yes

Subtools


  • BUNCH
  • CHROMIXS
  • CRYSON
  • DAMAVER
  • DATtools
  • GLOBSYMM
  • GNOM
  • MASSHA
  • MIXTURE
  • MONSA
  • OLIGOMER
  • PRIMUS
  • SUPCOMB

Maintainers


  • person_outline Dmitri I. Svergun
  • person_outline Maxim Petoukhov
  • person_outline Daniel Franke

Information


Unique identifier OMICS_20488
Name ATSAS
Software type Application/Script
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Version 2.8.3
Stability Stable
Registration required Yes
Maintained Yes

Subtools


  • BUNCH
  • CHROMIXS
  • CRYSON
  • DAMAVER
  • DATtools
  • GLOBSYMM
  • GNOM
  • MASSHA
  • MIXTURE
  • MONSA
  • OLIGOMER
  • PRIMUS
  • SUPCOMB

Versioning


No version available

Maintainers


  • person_outline Dmitri I. Svergun
  • person_outline Maxim Petoukhov
  • person_outline Daniel Franke

Publications for ATSAS

ATSAS citations

 (718)
library_books

Structural basis for the recognition of complex type N glycans by Endoglycosidase S

2018
Nat Commun
PMCID: 5951799
PMID: 29760474
DOI: 10.1038/s41467-018-04300-x

[…] y plot suggest the protein show some flexibility in solution. The maximum dimensions (Dmax), the interatomic distance distribution functions (P(r)), and the radii of gyration (Rg) were computed using GNOM. The molecular mass was determined using ScÅter,. The low-resolution structures of EndoSD233A/E235L in presence and absence of G2 product were calculated ab initio by using GASBOR. The results an […]

call_split

Consensus Bayesian assessment of protein molecular mass from solution X ray scattering data

2018
Sci Rep
PMCID: 5940760
PMID: 29739979
DOI: 10.1038/s41598-018-25355-2
call_split See protocol

[…] h an additional extrapolation to infinity. Finally, the mass estimate is obtained by dividing the volume by 1.37. This method, that we call MMQp is not the same as that implemented in DATPOROD of the ATSAS suite, which applies additional correction factors and yields otherwise worse MM estimates (see Supplementary Material ). […]

library_books

Molecular mechanism of influenza A NS1 mediated TRIM25 recognition and inhibition

2018
Nat Commun
PMCID: 5940772
PMID: 29739942
DOI: 10.1038/s41467-018-04214-8

[…] MUS. The radii of gyration Rg of all samples were extracted by the Guinier approximation with the same programme and also together with Dmax were calculated from pairwise distribution functions using GNOM. All statistics are summarised according to Trewhella et al. in Supplementary Table .PRYSPRY-CC models to fit against the experimental data were generated using a restrained MD/SA protocol implem […]

call_split

Conformational sampling of membranes by Akt controls its activation and inactivation

2018
Proc Natl Acad Sci U S A
PMCID: 5924885
PMID: 29632185
DOI: 10.1073/pnas.1716109115
call_split See protocol

[…] every second for the duration of the size exclusion run. Buffer subtraction was performed by averaging 50 frames either side of the peak. All subsequent data processing steps were performed using the ATSAS data analysis software 2.8.2. The program DATGNOM () was used to generate the pair distribution function [P(r)] for each isoform and to determine Dmax and Rg from the scattering curves [I(q) vs. […]

library_books

Quantitative 3D determination of self assembled structures on nanoparticles using small angle neutron scattering

2018
Nat Commun
PMCID: 5890256
PMID: 29632331
DOI: 10.1038/s41467-018-03699-7

[…] smaller when the contrast of longer ligand is matched to the solvent. The accurate chain lengths of the two ligands could be further calculated from pair distance distribution functions, P(r), using GNOM package (Fig. ). Dmax in the P(r) represents the largest distance in the system, which is the overall diameter of the core-shell nanoparticles. The Dmax of PET-dDDT and dPET-DDT are 58 and 75 Å, […]

library_books

Solution scattering study of the Bacillus subtilis PgdS enzyme involved in poly γ glutamic acids degradation

2018
PLoS One
PMCID: 5880399
PMID: 29608608
DOI: 10.1371/journal.pone.0195355

[…] gle data collected at lower concentration was merged with the highest concentration high angle data to yield the final composite scattering curve.All SAXS data were processed with the program package ATSAS []. The scattering of buffers were subtracted from that of the samples, and then were extrapolated to zero concentrations using standard procedures and program PRIMUS []. The resultant curves we […]


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ATSAS institution(s)
European Molecular Biology Laboratory, Hamburg Outstation, Hamburg, Germany; Federal Scientific Research Centre ‘Crystallography and Photonics’ of Russian Academy of Sciences, Moscow, Russia; N. Frumkin Institute of Physical Chemistry and Electrochemistry RAS, Moscow, Russia; N.N. Semenov Institute of Chemical Physics of Russian Academy of Sciences, Moscow, Russia; National Research Centre ‘Kurchatov Institute’, Moscow, Russia; Department of Chemical Engineering, Stanford University, Stanford, CA, USA
ATSAS funding source(s)
Supported by FP7 Research Infrastructures (award Nos. Biostruct-X [283570], IDPbyNMR [264257], iNEXT [653706]); BMBF (award Nos. BIOSCAT [05K12YE1], TT-SAS [05K16YEA]); HFSP (award No. RGP0017/2012); DFG/GACR (award No. 9/5-1).

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