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ATTRACT specifications

Information


Unique identifier OMICS_24504
Name ATTRACT
Alternative name iATTRACT (interface ATTRACT)
Interface Web user interface
Restrictions to use None
Input data Protein structure (PDB file) and peptide sequence
Output data Archive with docking script
Computer skills Basic
Stability Stable
Maintained Yes

Subtool


  • pepATTRACT

Documentation


Maintainer


  • person_outline Martin Zacharias <>

Information


Unique identifier OMICS_24504
Name ATTRACT
Alternative name iATTRACT (interface ATTRACT)
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data Protein structure (PDB file) and peptide sequence
Output data Archive with docking script
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Subtool


  • pepATTRACT

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Documentation


Maintainer


  • person_outline Martin Zacharias <>

Publications for ATTRACT

ATTRACT in publications

 (2)
PMCID: 5305211
PMID: 28109157
DOI: 10.7554/eLife.21477.036

[…] partner repository with the dataset identifier pxd005831., interactions between ntr motifs and the histone h4 tail with lobe 2 were modeled using the fully blind peptide-protein docking protocol pepattract () in the attract docking engine () (www.attract.ph.tum.de/peptide.html). the termini of the motifs (‘peptides’) were left uncharged, other parameters were set to the default values […]

PMCID: 4947907
PMID: 27424515
DOI: 10.1038/srep29931

[…] calculations were performed. docking of proteins is still challenging, due to their high flexibility. several algorithms, also available by web-server, have been developed to this aim. for example, pepattract and cabs-dock server, based on a coarse-grained protein models, have been designed to efficiently take into account the protein conformational changes, obtaining satisfactory results. […]


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ATTRACT institution(s)
Physics Department T38, Technische Universitat Munchen, Garching, Germany
ATTRACT funding source(s)
Supported by the Center for Integrated Protein Science Munich (CIPSM) funded by Deutsche Forschungsgemeinschaft and PRACE-0 Grant Project; Grant number: pr89tu.

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