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AUDENS specifications

Information


Unique identifier OMICS_02477
Name AUDENS
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No

Versioning


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Publication for AUDENS

AUDENS citations

 (2)
library_books

ProbPS: A new model for peak selection based on quantifying the dependence of the existence of derivative peaks on primary ion intensity

2011
BMC Bioinformatics
PMCID: 3179969
PMID: 21849060
DOI: 10.1186/1471-2105-12-346

[…] e denovo algorithm or for tag identification. The probPS score can also be used to improve database searches by filtering out invalid peaks.We also compared probPS against the relevance value used in AuDeNS []. AuDeNS uses a framework for de novo sequencing of peptides. It first cleans the input spectrum with a number of data cleaning algorithms ("grass mowers"), followed by a sequencing algorithm […]

library_books

A novel approach to denoising ion trap tandem mass spectra

2009
Proteome Sci
PMCID: 2670284
PMID: 19292921
DOI: 10.1186/1477-5956-7-9

[…] spectrum denoising method before assigning peptides to spectra. In fact, most peptide identification algorithms adopt denoising methods as a pre-processing step. For example, PEAKS [], PepNovo [] and AUDENS [] all have their own denoising models. However, there are many ad hoc problems for spectrum denoising issues. Firstly, the property of un-equally spaced m/z values of spectra makes it improper […]


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AUDENS institution(s)
Institute of Plant Sciences, Swiss Federal Institute of Technology, ETH Zentrum, Z├╝rich, Switzerland

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