AutoAssign specifications

Information


Unique identifier OMICS_03382
Name AutoAssign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


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Information


Unique identifier OMICS_03382
Name AutoAssign
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for AutoAssign

AutoAssign in publications

 (12)
PMCID: 5587626
PMID: 28815397
DOI: 10.1007/s10858-017-0126-5

[…] of sample conditions, analytical conditions, experimental parameters, and spectral artefacts that can each contribute a different source of variation to a peak’s position, i.e. center., fig. 1 , autoassign, an automated resonance assignment software for solution nmr hn-based peak lists, was the first automated protein resonance assignment tool to provide the ability to register different […]

PMCID: 4720288
PMID: 26788853
DOI: 10.1371/journal.pone.0146496

[…] spectra[] followed by the automated hyper-dimensional spectrum analysis generates clean peak lists with already prebuilt spin systems that can be efficiently used by automated assignment software autoassign []. the process is repeated (to accumulate more data in the experiments) and iterated until the assignment is sufficiently complete or converges. a 30% sampling schedule was used […]

PMCID: 4475061
PMID: 26011858
DOI: 10.7554/eLife.06547.048

[…] experimental = 7216 da., nmr data were recorded on a varian inova 600 mhz spectrometer equipped with a cryogenic probe, processed using felix 2007 (felix nmr, inc.), and analyzed using sparky3 (), autoassign (), and nmrviewj (onemoon scientific). ist1303-366 backbone resonances were assigned using standard triple resonance experiments () from a sample containing 0.4 mm uniformly 13c- […]

PMCID: 4290613
PMID: 25521775
DOI: 10.1186/1471-2164-15-S9-S3

[…] taurus tubulin b-chain [pdb id: 1sa0] as the template []. the resultant homology model was validated using online psvs suite [] which comprises a number of software namely, dssp [,], pdbstat (5.9), autoassign [], rpf analysis [,], pdb validation server, verify3d (1.0) [], prosaii (2003) [], procheck (3.5.4) []. along with these, molprobity [] programs and other software are also present., […]

PMCID: 4092069
PMID: 25010333
DOI: 10.1371/journal.pone.0101787

[…] concentration. data was processed with prosa , nmrpipe and felix (felixnmr, san diego ca). sequence-specific resonance assignment of srfn and yaho was performed in a semi-automated fashion using autoassign and cara . structures of srfn and yaho were calculated using automatic noe assignment in as-dp and cyana , followed by iterative manual refinement using cyana, and final refinement […]


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AutoAssign institution(s)
Center for Advanced Biotechnology and Medicine and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USA

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