AutoAssign statistics

Tool stats & trends

Looking to identify usage trends or leading experts?


AutoAssign specifications


Unique identifier OMICS_03382
Name AutoAssign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available


Unique identifier OMICS_03382
Name AutoAssign
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for AutoAssign

AutoAssign citations


Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping

J Biomol NMR
PMCID: 5587626
PMID: 28815397
DOI: 10.1007/s10858-017-0126-5

[…] starlib functionality to access assigned chemical shift values for H, C and N resonances for each residue in a protein chain and then saves them as a peak list file in different formats (e.g. Sparky, AutoAssign, JSON). Moreover, the algorithm provides the ability to add varying amounts of noise to each dimension of the peak list in order to create more realistic data sets. The peak list simulator […]


Backbone Assignment of the MALT1 Paracaspase by Solution NMR

PLoS One
PMCID: 4720288
PMID: 26788853
DOI: 10.1371/journal.pone.0146496
call_split See protocol

[…] nce spectra[] followed by the automated hyper-dimensional spectrum analysis generates clean peak lists with already prebuilt spin systems that can be efficiently used by automated assignment software AutoAssign []. The process is repeated (to accumulate more data in the experiments) and iterated until the assignment is sufficiently complete or converges. A 30% sampling schedule was used for the HN […]


ULK3 regulates cytokinetic abscission by phosphorylating ESCRT III proteins

PMCID: 4475061
PMID: 26011858
DOI: 10.7554/eLife.06547.048

[…] NMR data were recorded on a Varian INOVA 600 MHz spectrometer equipped with a cryogenic probe, processed using FELIX 2007 (Felix NMR, Inc.), and analyzed using SPARKY3 (), AutoAssign (), and NMRViewJ (OneMoon Scientific). IST1303-366 backbone resonances were assigned using standard triple resonance experiments () from a sample containing 0.4 mM uniformly 13C- and 15N-en […]


Fragment based group QSAR and molecular dynamics mechanistic studies on arylthioindole derivatives targeting the α β interfacial site of human tubulin

BMC Genomics
PMCID: 4290613
PMID: 25521775
DOI: 10.1186/1471-2164-15-S9-S3

[…] s taurus tubulin B-chain [PDB ID: 1SA0] as the template []. The resultant homology model was validated using online PSVS suite [] which comprises a number of software namely, DSSP [,], pdbStat (5.9), AutoAssign [], RPF Analysis [,], PDB validation server, Verify3D (1.0) [], ProsaII (2003) [], PROCHECK (3.5.4) []. Along with these, Molprobity [] programs and other software are also present.The tubu […]


Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO

PLoS One
PMCID: 4092069
PMID: 25010333
DOI: 10.1371/journal.pone.0101787

[…] wer concentration. Data was processed with PROSA , NMRPipe and Felix (FelixNMR, San Diego CA). Sequence-specific resonance assignment of SrfN and YahO was performed in a semi-automated fashion using AutoAssign and CARA . Structures of SrfN and YahO were calculated using automatic NOE assignment in AS-DP and CYANA , followed by iterative manual refinement using CYANA, and final refinement with X […]


High Quality NMR Structure of Human Anti Apoptotic Protein Domain Mcl 1(171 327) for Cancer Drug Design

PLoS One
PMCID: 4008586
PMID: 24789074
DOI: 10.1371/journal.pone.0096521

[…] (HN, Hα, N, Cα) and Hβ/Cβ resonance assignments were obtained by using (4,3)D HNNC αβ C α (63 hours)/(4,3)D C αβ C α(CO)NHN (62 hours), and (4,3)D H αβ C αβ (CO)NHN (69 hours) along with the program AUTOASSIGN . More peripheral side chain chemical shifts were assigned with aliphatic (4,3)D HCCH (87 hours) and 3D 15N/13Caliphatic/13Caromatic-resolved [1H,1H]-NOESY ,. Overall, assignments were obt […]


Looking to check out a full list of citations?

AutoAssign institution(s)
Center for Advanced Biotechnology and Medicine and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ, USA

AutoAssign reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AutoAssign