AutoCSA statistics

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Citations per year

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Popular tool citations

chevron_left Sequence alignment Variant detection chevron_right
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Tool usage distribution map

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Associated diseases

Associated diseases

AutoCSA specifications


Unique identifier OMICS_10355
Name AutoCSA
Alternative name Automatic Comparative Sequence Analysis
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes


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  • person_outline AutoCSA Team <>

Publication for Automatic Comparative Sequence Analysis

AutoCSA in publications

PMCID: 2429969
PMID: 18654614
DOI: 10.1371/journal.pcbi.1000113

[…] into several software packages, including polyphred , staden package , codoncode aligner (codoncode corp., dedham, ma, usa), mutation surveyor (softgenetics), novosnp , insnp , polyscan , and autocsa . this approach has been used to detect and characterize sequence variants in clinical applications, such as detecting somatic heterozygous variants in primary cancers , and to discover rare […]

PMCID: 5947781
PMID: 17485433
DOI: 10.1093/bioinformatics/btm152

[…] nature and admixed normal tissue, heterozygous variants found in primary cancers are often subtle and difficult to detect. to address these issues, we have developed a mutation detection algorithm, autocsa, specifically optimized for the high throughput screening of cancer samples., cancers arise due to the accumulation of mutations in critical target genes conferring growth/survival advantage […]

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AutoCSA institution(s)
Cancer Genome Project, Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, UK; 2NGRL (Wessex), Salisbury District Hospital, Salisbury, UK

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