AutoGRAPH pipeline

AutoGRAPH specifications

Information


Unique identifier OMICS_11722
Name AutoGRAPH
Interface Web user interface
Restrictions to use None
Input data Preinserted datasets, Personal datasets
Output data The program output consists of: (i) a figure showing gene order relationships by means of connecting lines within each CS and conserved segments ordered (CSO), across two to three species, and identifying the evolutionary breakpoint regions delimiting CS and/or CSO; (ii) two modes, making it possible to construct comparative maps with or without one-to-zero relationship anchors, to switch the orientation of each map and to scale images by a factor of 0.5 to 2; (iii) a table listing all CS, CSO and breakpoints, with their size, number of genes, chromosome coordinates and gene density.
Programming languages PHP
Database management system MySQL
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publication for AutoGRAPH

AutoGRAPH IN pipeline

2017
PMCID: 5240624
PMID: 28094805
DOI: 10.1038/srep40728

[…] a gene in a mapped contig with the physical position of its putative ortholog in a. lyrata). comparisons for each linkage group are shown in supplementary figs 20–27. images were generated using autograph65. we also evaluated the microsynteny between b. vulgaris and a. lyrata using simplesynteny66 for several b. vulgaris contigs (supplementary figs 28–30). b. vulgaris contigs with sequence […]

AutoGRAPH institution(s)
CNRS UMR6061 Génétique et Développement, Université de Rennes1 IFR140, Rennes, France

AutoGRAPH reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AutoGRAPH