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autoGU specifications


Unique identifier OMICS_19835
Name autoGU
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability No
Maintained No


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Publications for autoGU

autoGU citations


High Throughput Analysis and Automation for Glycomics Studies

PMCID: 4363487
PMID: 25814696
DOI: 10.1007/s10337-014-2803-9

[…] database can be performed for mass spectrometric data by glycopeptide search [], glycosearchms [], and glycopep db [], while hplc derived glycan traits can be interpreted by glycoextractor [] and autogu []., glycomic and glycoproteomic databases have been reviewed by hizal et al. [] and campbell et al. [], of note being the metadatabases glycomedb (containing entries from cfg, kegg, […]


Bioinformatics and molecular modeling in glycobiology

PMCID: 2912727
PMID: 20364395
DOI: 10.1007/s00018-010-0352-4

[…] (hplc) technologies continues to improve the detailed analysis and sequencing of glycan structures released from glycoproteins. in the context of the eurocarbdb project, an analytical tool (autogu) [] was developed to assist in the interpretation, assignment, and annotation of hplc-glycan profiles. autogu assigns provisional structures to each integrated hplc peak and, when used […]


Glycan labeling strategies and their use in identification and quantification

Anal Bioanal Chem
PMCID: 2911528
PMID: 20225063
DOI: 10.1007/s00216-010-3532-z

[…] axis of glucose units (gus), relating the oligosaccharide migration properties to the elution positions of these glucose oligomers []. rudd and coworkers have established a database (glycobase and autogu) which allows the structural assignment of 2-ab-labeled oligosaccharides on the basis of migration positions on a tsk-amide-80 column. in this database, gus are listed for 2-ab-labeled glycans […]

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autoGU institution(s)
National Institute for Bioprocessing Research and Training, Dublin, Ireland; Biomolecular Frontiers Research Centre, Department of Chemistry and Biomolecular Sciences, Macquarie University, NSW, Sydney, Australia; Culham Science Centre, Ludger Ltd, Culham, UK
autoGU funding source(s)
Supported by the European Union as a Research Infrastructure Design Study implemented as a Specific Support Action under the FP6 Research Framework Program (RIDS Contract number 011952).

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