ACDC specifications

Information


Unique identifier OMICS_14377
Name Automated Contamination Detection and Confidence estimation
Interface Web user interface
Restrictions to use None
Input data A genome assembly.
Input format FASTA
Programming languages C++
License MIT License
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Markus Lux <>

Information


Unique identifier OMICS_14377
Name Automated Contamination Detection and Confidence estimation
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A genome assembly.
Input format FASTA
Operating system Unix/Linux
Programming languages C++
License MIT License
Computer skills Advanced
Stability Stable
Requirements C++ compiler, CMake, Boost C++
Maintained Yes

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Maintainer


  • person_outline Markus Lux <>

ACDC article

ACDC institution(s)
Computational Methods for the Analysis of the Diversity and Dynamics of Genomes, Bielefeld University, Bielefeld, Germany; Center for Biotechnology - CeBiTec, Bielefeld University, Bielefeld, Germany; DOE Joint Genome Institute, Walnut Creek, CA, USA; CITEC centre of excellence, Bielefeld University, Bielefeld, Germany; Australian Centre for Ecogenomics, University of Queensland, ST LUCIA, QLD, Brisbane, Australia
ACDC funding source(s)
This contribution has been made possible through the German-Canadian DFG international research training group “Computational Methods for the Analysis of the Diversity and Dynamics of Genomes” (DiDy) GRK 1906/1. The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231.

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