aRNApipe specifications

Unique identifier:
OMICS_12214
Software type:
Pipeline/Workflow
Restrictions to use:
None
Operating system:
Unix/Linux
License:
MIT License
Version:
1.2
Maintained:
Yes
Name:
automated RNA-seq pipeline
Interface:
Command line interface
Input data:
An analysis configuration, and the samples to include in the analysis.
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable

versioning

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aRNApipe distribution

download

aRNApipe support

Documentation

Maintainer

  • Richard M. Myers <>

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Credits

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Publications

Institution(s)

HudsonAlpha Institute for Biotechnology, Huntsville, AL, USA; Rheumatology Research Group, Vall d'Hebron Hospital Research Institute, Barcelona, Spain; Department of Genetics, The University of Alabama at Birmingham, Birmingham, AL, USA

Funding source(s)

Supported by funds from The HudsonAlpha Institute for Biotechnology; by the NIH-National Institute of General Medical Sciences Medical Scientist Training Program (5T32GM008361-21); and by the William J. Maier III Fellowship in Cancer Prevention (Prevent Cancer Foundation).

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