ASSIsT specifications

Unique identifier:
OMICS_09713
Software type:
Package/Module
Restrictions to use:
None
Output data:
Results can be exported to different formats and therefore can be fed straight to marker-trait association analysis software like FlexQTL, HapMap, GAPIT, JoinMap, PLINK, Structure and Tassel.
Operating system:
Unix/Linux, Windows
License:
GNU General Public License version 2.0
Stability:
Stable
Name:
Automatic SNP ScorIng Tool
Interface:
Graphical user interface
Input data:
ASSIsT requires three input files: a pedigree file in which the parents of each sample are reported and two standard report files from GS (Final Report and DNA Report). The two GS reports are standard output of commercial service companies.
Biological technology:
Illumina
Programming languages:
Python
Computer skills:
Medium
Maintained:
Yes

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ASSIsT support

Maintainer

  • Eric W. van de Weg <>

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Publications

Institution(s)

Wageningen UR Plant Breeding, AA Wageningen, Netherlands; Research and Innovation Centre, Fondazione Edmund Mach, San Michele all’Adige, Trento, Italy; Graduate School Experimental Plant Sciences, Wageningen University, AJ Wageningen, Netherlands; IRTA. Centre de Recerca en Agrigenómica CSIC-IRTA-UAB, Campus UAB-UB – Edifici CRAG, Beellaterra (Cerdanyola del Vallés), Barcelona, Spain

Funding source(s)

This work has been co-funded by the EU seventh Framework Programme by the FruitBreedomics project N°. 265582: Integrated Approach for increasing breeding efficiency in fruit tree crops.

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