AutoQC specifications


Unique identifier OMICS_33393
Name AutoQC
Alternative name Panorama AutoQC
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes




No version available


  • person_outline Michael Bereman

Publication for AutoQC

AutoQC citations


QCloud: A cloud based quality control system for mass spectrometry based proteomics laboratories

PLoS One
PMCID: 5764250
PMID: 29324744
DOI: 10.1371/journal.pone.0189209

[…] s [], introduced web-based interfaces, interactive plots and comparison capabilities to assist instrument operators in monitoring quality control metric. Other tools, such as OpenMS [], iMonDB [] and AutoQC [], have also contributed to automate the extraction of quality metrics from raw files and, thus, to generate automatic pipelines for quality control. In parallel, methods for evaluating multiv […]


Diversity of Amyloid beta Proteoforms in the Alzheimer’s Disease Brain

Sci Rep
PMCID: 5572664
PMID: 28842697
DOI: 10.1038/s41598-017-10422-x

[…] s BSA (#P8108S, New England BioLabs, Ipswich, MA) was injected every 12–18 hrs to monitor instrument drift and variability over time. 29 BSA peptides from each interwoven QA/QC run were analyzed with AutoQC for instrument performance metrics (Supplementary Fig. ).Separations were performed using an online NanoAcquity UPLC (Waters). The chromatographic separation was performed on an ACQUITY UPLC HS […]

AutoQC institution(s)
Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA; Department of Chemistry, North Carolina State University, Raleigh, NC, USA; Department of Genome Sciences, University of Washington, Seattle, WA, USA; LabKey Software, Seattle, WA, USA
AutoQC funding source(s)
Supported by the NC State University, the Center for Human Health and Environment (P30 ES025128), in part by National Institutes of Health grants R01 GM103551 and P41 GM103533 and the Panorama Partners Program.

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