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AutoShim specifications


Unique identifier OMICS_19802
Name AutoShim
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Dockit, Magnet
Source code URL
Maintained Yes


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  • person_outline Eric Martin <>

Publications for AutoShim

AutoShim in publications

PMCID: 5661373
PMID: 29118697
DOI: 10.3389/fnhum.2017.00506

[…] bands next to the roi for the svs acquisition, while only two vss bands were placed in the s/i direction for the acquisition with 8 × 8 × 1 phase encoding array. the manufacturer’s linear autoshim procedure was performed before spectral acquisition., regions of interest considered were from the acc, right caudate (rcaud), and left superior temporal gyrus (lstg). a novel automated […]

PMCID: 5404613
PMID: 28350397
DOI: 10.1038/tp.2017.42

[…] axial inversion recovery-weighted spoiled gradient recalled sequence with the following parameters was used: field of view=25.6 cm, matrix=256 × 200, isotropic voxels (1 × 1 × 1 mm3), autoshim, repetition time/echo time=7.6/3.5 ms, transmit/receive head coil, flip angle=8°, sense=0 and 1 mm-thick contiguous 180 slices of the whole brain. hippocampal volumes were extracted using […]

PMCID: 5541117
PMID: 28168364
DOI: 10.1007/s00429-016-1352-4

[…] zwaag et al. ). as the field strength increases, the b0 inhomogeneity increases as well resulting in an inhomogeneous tissue contrast (van de moortele et al. ; van der zwaag et al. ). however, the autoshim facility of the 7t mri scanner used is normally observed to provide a satisfactory shim, and is comparable to other 7t mri sites (voelker et al. )., a final limitation is the low number […]

PMCID: 5484368
PMID: 27990708
DOI: 10.1002/jmri.25564

[…] for 1h/19f mrs/mri. the broad frequency response of the coil permitted imaging on both the 1h and 19f nuclei. post‐mortem imaging was conducted using a home‐built 80 × 40 mm2 butterfly coil., an autoshim method was used for in vivo mouse shimming on the 1h resonance, as described previously. in vivo 1h and 19f mr images were acquired in mice (thoracic area) using a segmented k‐space, […]

PMCID: 4998097
PMID: 27588049
DOI: 10.3892/etm.2016.3449

[…] where, if the ct value in the venous phase was >30% greater than that in the arterial phase, then there was a persistent enhancement., a 3.0t breast-dedicated mri scanner was employed with an autoshim independent shimming technique to avoid interference from the fatty tissues of breast, chest and armpits during the collection of images. to assess regional magnetic homogeneity and fat […]

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AutoShim institution(s)
Department of Computer Aided Drug Discovery, Global Discovery Chemistry, Novartis Institutes for Biomedical Research, Emeryville, CA, USA

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