AutoSNPdb specifications


Unique identifier OMICS_03224
Name AutoSNPdb
Restrictions to use None
Version 1.4
Maintained Yes


  • Plants and Fungi
    • Hordeum vulgare
    • Oryza sativa

Publications for AutoSNPdb

AutoSNPdb citations


NABIC SNP: an integrated database for SNP markers

PMCID: 4546998
PMID: 26339155
DOI: 10.6026/97320630011369

[…] rface facilitating database accessibility via keywords search such as polymorphisms, genes and drug-metabolizing enzymes, etc []. For the important crops such as rice, barley, wheat and Brassica, the AutoSNPdb provides both information on annotated SNPs using graphical interface and integrated pipeline to discover SNPs []. Especially for rice, the SNP-Seek system is a database for SNPs as well as […]


Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP

PMCID: 4009776
PMID: 24832230
DOI: 10.3390/biology1020370

[…] hly homozygous [,,,]. Because of this, we have established a novel method for SNP discovery from complex genomes called SGSautoSNP, extended from original concepts developed in autoSNP, SNPServer and autoSNPdb [,,]. Rather that attempting to identify all possible SNPs across a genome, SGSautoSNP aims to identify as many highly confident SNPs as possible with the acknowledgement that not all biolog […]

AutoSNPdb institution(s)
Australian Centre for Plant Functional Genomics, Brisbane, School of Land, Crop and Food Sciences; The Institute for Molecular Bioscience; Queensland Facility for Advanced Bioinformatics, The Institute for Molecular Bioscience, ARC Centre of Excellence in Bioinformatics; ARC Centre of Excellence for Integrative Legume Research, University of Queensland, Brisbane, QLD, Australia

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