Integrates SNP and gene annotation information with a graphical viewer. AutoSNPdb hosts data for the important crops rice, barley and Brassica. Users may rapidly identify polymorphic sequences of interest through BLAST sequence comparison, keyword searches of annotations derived from UniRef90 and GenBank comparisons, GO annotations or in genes corresponding to syntenic regions of reference genomes. In addition, SNPs between specific varieties may be identified for targeted mapping and association studies.
Australian Centre for Plant Functional Genomics, Brisbane, School of Land, Crop and Food Sciences; The Institute for Molecular Bioscience; Queensland Facility for Advanced Bioinformatics, The Institute for Molecular Bioscience, ARC Centre of Excellence in Bioinformatics; ARC Centre of Excellence for Integrative Legume Research, University of Queensland, Brisbane, QLD, Australia