AVPpred specifications

Information


Unique identifier OMICS_05721
Name AVPpred
Alternative name AntiViral Peptides
Interface Web user interface
Restrictions to use None
Input data Single or multiple peptide sequence(s)
Input format FASTA
Output data AVP motif, sequence alignment, composition and physico-chemical properties
Programming languages PHP
Computer skills Basic
Stability Stable
Maintained Yes

Publication for AntiViral Peptides

AVPpred in publications

 (6)
PMCID: 5304217
PMID: 28205576
DOI: 10.1038/srep42362

[…] antimicrobial agents by identifying the best candidate amp prior to the synthesis and testing against pathogens in wet-lab. in this direction, computational tools like antibp, amper, camp, antibp2, avppred, classamp, iamp-2l and efc-fcbf have been developed for the prediction of amps. the binary (0, 1) and compositional features were used in antibp and antibp2 respectively to map the peptide […]

PMCID: 4670226
PMID: 26636321
DOI: 10.1371/journal.pone.0144171

[…] to predict the activities of peptides [, ]. recently, a support vector machine (svm) algorithm was employed to predict the antivirus activities using the physicochemical properties of general antiviral peptides []. however, the mechanism of action of antiviral peptides is different from antimicrobial peptides; in fact, various protein targets are involved in the virus infection. e.g. […]

PMCID: 4426897
PMID: 26000295
DOI: 10.1155/2015/475062

[…] also provides an easy access to link amp sequences to structures and vice versa., adam contains 7,007 unique amp sequences extracted from twelve databases (). the twelve databases include apd2 [], avppred [], bactibase [], bagel3 [], camp2 [], dadp [], dampd [], hipdb [], penbase [], phytamp [], rapd [], and yadamp []. the amp sequences in adam were mostly derived from natural sources, […]

PMCID: 3795628
PMID: 24146939
DOI: 10.1371/journal.pone.0076876

[…] observed. supernatants were clarified by centrifugation at 800 xg for 5 min, and aliquots were stored at -70°c before use. virus titer was determined by the tcid50 method., the design of potentially antiviral peptides (avps) against influenza a virus was carried out as previously described []. briefly, the ha1 and ha2 sequences available until august 2011 were separately downloaded from the ncbi […]

PMCID: 3734225
PMID: 23940542
DOI: 10.1371/journal.pone.0070166

[…] jry. performed the experiments: kyc jry. analyzed the data: kyc jry. contributed reagents/materials/analysis tools: kyc. wrote the paper: kyc jry., the goal of this study was to examine and predict antiviral peptides. although antiviral peptides hold great potential in antiviral drug discovery, little is done in antiviral peptide prediction. in this study, we demonstrate that a physicochemical […]


To access a full list of publications, you will need to upgrade to our premium service.

AVPpred institution(s)
Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India
AVPpred funding source(s)
This project was supported by the Council of Scientific and Industrial Research (CSIR); the Department of Biotechnology, the Government of India and CSIR-IMTECH [Communication No. 013/2012].

AVPpred reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review AVPpred