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Number of citations per year for the bioinformatics software tool AVPpred
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Protocols

AVPpred specifications

Information


Unique identifier OMICS_05721
Name AVPpred
Alternative name AntiViral Peptides
Interface Web user interface
Restrictions to use None
Input data Single or multiple peptide sequence(s)
Input format FASTA
Output data AVP motif, sequence alignment, composition and physico-chemical properties
Programming languages PHP
Computer skills Basic
Stability Stable
Maintained Yes

Publication for AntiViral Peptides

AVPpred citations

 (9)
library_books

Myticalins: A Novel Multigenic Family of Linear, Cationic Antimicrobial Peptides from Marine Mussels (Mytilus spp.)

2017
Mar Drugs
PMCID: 5577615
PMID: 28829401
DOI: 10.3390/md15080261

[…] was investigated with APD3 []. The potential antibiofilm and antiviral activities of myticalins were predicted in silico with the dPABBs server (http://ab-openlab.csir.res.in/abp/antibiofilm/) [] and AVPpred (http://crdd.osdd.net/servers/avppred/) [], respectively. Finally, the cell-penetration activity of the mature peptides was predicted with CellPPD (http://crdd.osdd.net/raghava/cellppd/) []. T […]

call_split

Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico chemical and structural features into Chou’s general PseAAC

2017
Sci Rep
PMCID: 5304217
PMID: 28205576
DOI: 10.1038/srep42362
call_split See protocol

[…] ibacterial, antiviral and antifungal peptide sequences were collected from publicly available databases (or datasets). Specifically, antibacterial peptides were collected from CAMP, APD3 and AntiBP2; antiviral peptides were collected from CAMP, APD3, LAMP and AVPpred; antifungal peptides were collected from CAMP, LAMP and APD3. The sequences having non-standard amino acids were then removed follow […]

library_books

Bioactive Molecules Released in Food by Lactic Acid Bacteria: Encrypted Peptides and Biogenic Amines

2016
Front Microbiol
PMCID: 4899451
PMID: 27375596
DOI: 10.3389/fmicb.2016.00876

[…] ides (; ), especially antibacterial peptides, due to the urgent issue to face antibiotic resistance (; ). APD2 and CAMP are databases set up to classify not only antibacterial but also antifungal and antiviral peptides (; ). An even larger target is supplied by BIOPEP, Pep Bank, and Peptide DB, also classifying peptide hormones, growth factors and cytokines ().A new term, “nutritional peptidomics” […]

library_books

Identification of Peptide Inhibitors of Enveloped Viruses Using Support Vector Machine

2015
PLoS One
PMCID: 4670226
PMID: 26636321
DOI: 10.1371/journal.pone.0144171

[…] AVPpred is a web server for prediction of the activities of general antiviral peptides (AVPs) based on a number of experimentally validated positive and negative data sets []. The peptide inhibitors e […]

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A Large Scale Structural Classification of Antimicrobial Peptides

2015
Biomed Res Int
PMCID: 4426897
PMID: 26000295
DOI: 10.1155/2015/475062
call_split See protocol

[…] ADAM contains 7,007 unique AMP sequences extracted from twelve databases (). The twelve databases include APD2 [], AVPpred [], BACTIBASE [], BAGEL3 [], CAMP2 [], DADP [], DAMPD [], HIPdb [], PenBase [], PhytAMP [], RAPD [], and YADAMP []. The AMP sequences in ADAM were mostly derived from natural sources, covering […]

library_books

Current scenario of peptide based drugs: the key roles of cationic antitumor and antiviral peptides

2013
Front Microbiol
PMCID: 3813893
PMID: 24198814
DOI: 10.3389/fmicb.2013.00321

[…] against viruses that cause diseases in humans. However, few studies have demonstrated the potential application of these peptides in animal health. Here we present studies showing the application of antiviral peptides in aquaculture. Viral diseases have emerged as the most serious infectious problems for the fish aquacultural industry, and studies have found promising cationic antivirus peptides […]


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AVPpred institution(s)
Bioinformatics Centre, CSIR-Institute of Microbial Technology, Chandigarh, India
AVPpred funding source(s)
This project was supported by the Council of Scientific and Industrial Research (CSIR); the Department of Biotechnology, the Government of India and CSIR-IMTECH [Communication No. 013/2012].

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