Protocols

AXE specifications

Information


Unique identifier OMICS_19788
Name AXE
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages C
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Requirements
cmake, zlib, libqes
Maintained Yes

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Versioning


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Publication for AXE

AXE citation

call_split

Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change

2018
eLife
PMCID: 5951681
PMID: 29685183
DOI: 10.7554/eLife.31835.027
call_split See protocol

[…] he Biomolecular Resource Facility at the Australian National University, generating almost 260 million read pairs.We checked the quality of the raw sequencing reads with FastQC (v0.10.1, []). We used AXE (v0.2.6, [)) to demultiplex the sequencing reads according to each sample's unique combinatorial barcode and were unable to assign 11% of read pairs to a sample. We used trimit from libqcpp (v0.2. […]

AXE institution(s)
ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, ANU, Canberra, Australia

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