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Axis Comparison specifications


Unique identifier OMICS_28766
Name Axis Comparison
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A model file and optionally the detected helices, the detected strands and the location of text output file.
Input format PDB
Output format PDB
Operating system Unix/Linux
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes




No version available


  • person_outline Jing He

Axis Comparison citations


Mouth development

PMCID: 5574021
PMID: 28514120
DOI: 10.1002/wdev.275

[…] cated at the anterior end of the animal. Homology between the oral end of Cnidarians and the anterior end of bilaterians would suggest that the mouth arose once at a conserved position along the body axis.Comparison of Cnidarian and bilaterian body plans is complicated since, unlike bilaterians, where the anterior pole is characterized by a brain or accumulation of nerve cells, Cnidaria lack a cen […]


Dchs1–Fat4 regulation of polarized cell behaviours during skeletal morphogenesis

Nat Commun
PMCID: 4858749
PMID: 27145737
DOI: 10.1038/ncomms11469

[…] age matrix, together with histological analyses, revealed obvious changes in the sternum dimensions by E14.5 (; ). This included an obvious change in the depth of the sternum across the dorso-ventral axis (). Comparison of E14.5 Dchs1−/− mutants with wild-type littermates identified an average increase of 58% in width (; ; P<0.001; Dchs1+/+/Dchs1+/−, n=16 and Dchs1−/−, n=11), an average decrease o […]


High Spatial Resolution Cardiovascular Magnetic Resonance at 7.0 Tesla in Patients with Hypertrophic Cardiomyopathy – First Experiences: Lesson Learned from 7.0 Tesla

PLoS One
PMCID: 4749213
PMID: 26863618
DOI: 10.1371/journal.pone.0148066

[…] There were no significant differences between short axis and long axis assessment at 3.0T: LVEDV (p = 0.286), LVESV (p = 0.534), LVEF (p = 0.131) and LV-Mass (p = 0.155). The long axis comparison between 3.0T and 7.0T also revealed no significant differences: LVEDV (p = 0.110), LVESV (p = 0.091), LVEF (p = 0.182) and LV-MASS (p = 0.131) (). Plots are shown in .Quantitative anal […]


What is normal? Next generation sequencing driven analysis of the human circulating miRNAOme

BMC Mol Biol
PMCID: 4748454
PMID: 26860190
DOI: 10.1186/s12867-016-0057-9

[…] expression (reads per million; RPM expressed in Log 2 scale) of each of these miRNAs in human whole blood, serum and plasma (using publically available data via miRmine) is included on the right-hand axis. Comparison of plasma data from this study and those derived from miRMine revealed no clear correlation, however, significant variation within the later dataset may explain this finding (Fig. , r […]


Species complexes and phylogenetic lineages of Hoferellus (Myxozoa, Cnidaria) including revision of the genus: A problematic case for taxonomy

PMCID: 4709930
PMID: 26754529
DOI: 10.1186/s13071-015-1265-8

[…] oferellus spp. revealed similar minimum sequence dissimilarity to other members of freshwater urinary clade (19.8–21.9 %) except of H. gilsoni with the minimum sequence dissimilarity of 15.4 % (Fig. -axis). Comparison of clones of the ITS region revealed up to 4 % of maximum intraspecific sequence dissimilarity in sequences of Hoferellus s. s. and approximately 20 % of minimum sequence dissimilari […]


Discovery of γ Mangostin as an Amyloidogenesis Inhibitor

Sci Rep
PMCID: 4550876
PMID: 26310724
DOI: 10.1038/srep13570

[…] typical TTR stabilizers with two aromatic rings and a linker (e.g., tafamidis, resveratrol and glabridin) are known to bind along the twofold axis, the mangostins bound diagonally against the twofold axis (). Comparison with the other known inhibitors with a tricyclic ring system, such as phenox and dibenzofuran-4,6-dicarboxylic acid, also revealed that the tricyclic rings of mangostins did not fi […]


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