AxonDeepSeg specifications

Information

Unique identifier	OMICS_28014
Name	AxonDeepSeg
Software type	Application/Script
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS
Programming languages	Python
License	MIT License
Computer skills	Advanced
Version	0.2
Stability	Stable
Requirements	numpy, scipy, scikit-learn, scikit-image, tabulate, pandas, matplotlib, tensorflow, mpld3, tqdm, pillow, imageio
Maintained	Yes

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Documentation

Issues: https://github.com/neuropoly/axondeepseg/issues

Additional information

https://github.com/neuropoly/axondeepseg/wiki

Publication for AxonDeepSeg

AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks.

ArXiv

AxonDeepSeg institution(s)

NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, QC, Canada; Ecole Centrale de Lille, Lille, France; Ecole Centrale de Nantes, Nantes, France; Functional Neuroimaging Unit, CRIUGM, Université de Montréal, Montreal, QC, Canada

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