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AxonDeepSeg specifications
Information
| Unique identifier | OMICS_28014 |
|---|---|
| Name | AxonDeepSeg |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Operating system | Unix/Linux, Mac OS |
| Programming languages | Python |
| License | MIT License |
| Computer skills | Advanced |
| Version | 0.2 |
| Stability | Stable |
| Requirements |
numpy, scipy, scikit-learn, scikit-image, tabulate, pandas, matplotlib, tensorflow, mpld3, tqdm, pillow, imageio
|
| Maintained | Yes |
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Documentation
Additional information
https://github.com/neuropoly/axondeepseg/wiki
Publication for AxonDeepSeg
AxonDeepSeg citation
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AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks
[…] The pipeline of AxonDeepSeg is composed of four steps: data preparation, learning, evaluation and prediction. Figure illustrates each step.Figure 2In the data preparation step, raw microscopy images and correspondin […]
AxonDeepSeg institution(s)
NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, QC, Canada; Ecole Centrale de Lille, Lille, France; Ecole Centrale de Nantes, Nantes, France; Functional Neuroimaging Unit, CRIUGM, Université de Montréal, Montreal, QC, Canada
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