AxonDeepSeg statistics

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Citations per year

Number of citations per year for the bioinformatics software tool AxonDeepSeg
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Tool usage distribution map

This map represents all the scientific publications referring to AxonDeepSeg per scientific context
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Associated diseases

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Protocols

AxonDeepSeg specifications

Information


Unique identifier OMICS_28014
Name AxonDeepSeg
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License MIT License
Computer skills Advanced
Version 0.2
Stability Stable
Requirements
numpy, scipy, scikit-learn, scikit-image, tabulate, pandas, matplotlib, tensorflow, mpld3, tqdm, pillow, imageio
Maintained Yes

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Versioning


No version available

Documentation


Additional information


https://github.com/neuropoly/axondeepseg/wiki

Publication for AxonDeepSeg

AxonDeepSeg citation

call_split

AxonDeepSeg: automatic axon and myelin segmentation from microscopy data using convolutional neural networks

2018
Sci Rep
PMCID: 5830647
PMID: 29491478
DOI: 10.1038/s41598-018-22181-4
call_split See protocol

[…] The pipeline of AxonDeepSeg is composed of four steps: data preparation, learning, evaluation and prediction. Figure  illustrates each step.Figure 2In the data preparation step, raw microscopy images and correspondin […]


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AxonDeepSeg institution(s)
NeuroPoly Lab, Institute of Biomedical Engineering, Polytechnique Montreal, Montreal, QC, Canada; Ecole Centrale de Lille, Lille, France; Ecole Centrale de Nantes, Nantes, France; Functional Neuroimaging Unit, CRIUGM, Université de Montréal, Montreal, QC, Canada

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