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RCSB PDB / The Research Collaboratory for Structural Bioinformatics Protein Data Bank
Helps students and researchers to understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease. RCSB PDB is a database that provides a resource powered by the Protein Data Bank (PDB) archive - information about the 3D shapes of proteins, nucleic acids, and complex assemblies. Users can perform simple and complex queries on the data, analyze, and visualize the results.
Provides access to well-documented and tested epitope-related tools through a common style of web interface. IEDB-AR is a database that allows users to easily make direct comparisons between and among various prediction methods. The IEDB-AR provides five analytical tools for: (i) calculating the epitope population coverage; (ii) assessing the degree of conservancy of an epitope; (iii) visualization and analysis of 3D structures of molecules containing epitopes; (iv) clustering of epitope sequences and (v) mapping of epitopes onto 3D protein structures.
HLA-ADR / The HLA and Adverse Drug Reaction Database
An open database listing known adverse drug reactions with Human leukocyte antigens (HLA) alleles. The HLA-ADR has been implemented within the wider Allele Frequency Net Database (AFND), which stores large collections of data on the allele and haplotype frequencies for healthy, worldwide populations, as well as modules for exploring immunogenetic disease associations. HLA-ADR provides a resource that not only facilitates meta-analyses but also enables users to further their investigations by using resources available with the main AFND website, e.g. on the incidence of particular HLA alleles/haplotypes in healthy worldwide populations.
A database of cereal prolamin epitopes, peptides and proteins for expert users that are dealing with protein chemistry, proteomics and mass spectrometry, method developments and related applications in food science, agricultural breeding or medical studies. ProPepper™ contains the full scale of currently available prolamin sequences and specific in silico digested peptide entries, links to reference databases (Uniprot, NCBI & IEDB) and cross-referenced connections. The interface allows advanced global and parametric search functions along with a download option, with direct connections to the relevant public databases.
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