Computational protocol: Complete Genome Sequence and Comparative Genomics of a Novel Myxobacterium Myxococcus hansupus

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Protocol publication

[…] The proteome of the six Myxococcus members and other order Myxococcales members were scanned against the Pfam-A v 28.0 database [] with an E-value threshold of 1e-5 to identify functional domains and other known sequence motifs using hmmscan program of HMMER suite (http://hmmer.janelia.org/) []. The distribution of Pfam domain families among all genomes was analyzed. […]

Pipeline specifications

Software tools HMMER hmmscan, HMMER
Databases Pfam
Application Amino acid sequence alignment