Dataset features

Specifications


Application: ChIP-seq analysis
Number of samples: 3
Release date: Jun 8 2011
Last update date: Jan 21 2015
Access: Public
Diseases: Hepatoblastoma
Dataset link Smad2/3 binding sites in HaCaT, HepG2, and Hep3B cells determined by an Affymetrix promoter array

Experimental Protocol


We determined and analyzed cell-line-specific Smad2/3 binding sites by ChIP-chip. HaCaT, HepG2, and Hep3B cells were treated with TGF-β for 1.5 h. anti-Smad2/3 ChIP samples and their input DNAs were hybridized to the arrays. Each bed file contains Smad2/3 binding sites determined by two-sample analysis (NCBIv36/hg18, p<10-4).

Repositories


GEO

GSE28797

BioProject

PRJNA143093

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Contact


Daizo Koinuma

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