Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 88
Release date: Oct 1 2010
Last update date: Feb 22 2018
Access: Public
Diseases: Neoplasms
Dataset link Subcutaneous adipose tissue (SAT) gene expression patterns between weight control and regaining weight subjects

Experimental Protocol


Overall design: SAT transcriptome was defined at the beginning (CID2) and at the end (CID3) of the dietary intervention program using a common reference design: Cyanine-5 dye was incorporated into all SAT samples, while a reference RNA pool made of the mix of commercial human liver, adipose tissue, and skeletal muscle RNA was labeled with cyanine-3 dye. Samples were hybridized to Agilent 44K whole human genome microarrays. Evolution in gene expression patterns after dietary intervention was tested in terms of the ratio after/before dietary intervention (CID3/CID2) ratio.

Repositories


GEO

GSE19494

ArrayExpress

E-GEOD-19494

BioProject

PRJNA122409

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Contact


Nathalie Viguerie