Dataset features

Specifications


Application: ChIP-on-chip analysis
Number of samples: 4
Release date: Dec 30 2013
Last update date: Jul 8 2015
Access: Public
Diseases: Testicular Neoplasms
Chemicals: Adenine
Dataset link The Hox gene Abd-B controls stem cell niche function in the Drosophila testis

Experimental Protocol


Dam was fused to the N terminus of Abd-B and transgenic flies were generated. For identifying Abd-B targets in the Drosophila testis the fusion protein was expressed from the uninduced minimal Hsp70 promoter of the UAS vector pUAST (Brand and Perrimon, 1993). As a control for nonspecific Dam activity, transgenic flies expressing the Dam alone were used (Choksi et al., 2006). Subsequently, genomic DNA was extracted from 3rd instar larval testes, expressing either the Dam-Abd-B fusion protein or the Dam protein alone using a specific protocol (Tolhuis et al., 2011); and van Steensel personal communication). Two individual replicates, for Dam-AbdB and Dam alone, have been generated. Following a methylation-sensitive DNA digestion and PCR amplification, DNA fragments from Dam-Abd-B and control DNA were labeled and hybridized to genomic Affymetrix arrays in duplicates (Protocol available at “www.flychip.org.uk”).

Repositories


GEO

GSE53709

ArrayExpress

E-GEOD-53709

BioProject

PRJNA232693

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