Dataset features

Specifications


Application: ChIP-seq analysis, RNA-seq analysis
Number of samples: 7
Release date: Dec 31 2011
Last update date: Nov 14 2017
Access: Public
Genes: SP1
Taxon: Homo sapiens
Dataset link "Calling Cards" for DNA-binding proteins in mammalian cells

Experimental Protocol


These data contain mapped insertion sites from the piggyBac (PB) transposon into HCT116 cell line and sequenced using an Illumina GAII analyzer. The first set contains the insertion sites of transposons mapped from the wild-type PB transposase and the second set contains the insertion sites of transposons mapped with the PB transposase fused to the transcription factor SP1. Other sequencing data present are ChIP-seq data for SP1 in the HCT116 cell line and RNA-seq data.

Repositories


GEO

GSE34791

ArrayExpress

E-GEOD-34791

ENA

SRP010064

BioProject

PRJNA151051

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Contact


David Mayhew