Computational protocol: SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization

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Protocol publication

[…] Minimal free energy modelling was performed using RNAstructure software () and illustrated using XRNA. QGRS mapper was used to identify potential G-quadruplexes. […]

Pipeline specifications

Software tools RNAstructure, QGRS Mapper
Application RNA structure analysis
Organisms Feline immunodeficiency virus, Human immunodeficiency virus 2
Diseases Infection, Feline Acquired Immunodeficiency Syndrome
Chemicals Nucleotides