Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 15
Release date: Apr 1 2013
Last update date: Jun 30 2014
Access: Public
Taxon: Phaeodactylum tricornutum
Computational protocol: Clustal W, RAxML, Dendroscope, SigmaPlot
Dataset link Molecular responses to prolonged darkness and subsequent acclimation to re-illumination in the diatom Phaeodactylum tricornutum

Experimental Protocol


The cultures were incubated at 15C under cool white fluorescent light at a scalar irradiance (EPAR) of ~100 µmol m-2 s-1 under continuous white light (CWL) conditions. The cultures were dark-treated for 48 h (DT) before re-exposure to the previous light conditions for 0.5 h, 6 h or 24 h (WL 0.5, 6 and 24 h). Sampling of CWL cultures and DT cultures were performed in addition to the sampling at the WL incubation times of 0.5 h, 6 h, and 24 h. Three biological replicas for each of the five treatments were harvested.

Repositories


GEO

GSE42039

ArrayExpress

E-GEOD-42039

BioProject

PRJNA178965

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Contact


Per Winge

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