Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 157
Release date: Dec 1 2010
Last update date: Mar 22 2012
Access: Public
Taxon: Homo sapiens, Mus musculus
Dataset link Pre-Collaborative Cross liver gene expression

Experimental Protocol


Gene expression profiling from liver tissue from pre-CC males. Pre-Collaborative Cross (CC) mice are partially inbred strains created by intercrossing eight founder (parental) strains: 129S1/SvImJ, (129S1), A/J (AJ), C57BL/6J (B6), CAST/Ei (CAST), NOD/LtJ (NOD), NZO/H1LtJ (NZO), PWK/Ph (PWK), and WSB/Ei (WSB). Sister-brother mating in 220 families was done for 4-11 generations. One animal was sampled from 157 pre-CC strain. Hybridizations were performed at the Gene Expression Core Facility at The Jackson Laboratory. Samples were divided in six batches of about 11 to 24 samples. Two batches were performed per day. Probe-level data was summarized by a custom CDF file based on Ensembl genes (NCBI 37, Ensembl 49; htttp://brainarray.mbni.med.umich.edu). The parental strains are not part of this submission.

Repositories


GEO

GSE22297

ArrayExpress

E-GEOD-22297

BioProject

PRJNA127417

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Contact


Ricardo Verdugo
Ricardo Alejandro Verdugo