Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 55
Release date: Dec 31 2014
Last update date: Aug 13 2018
Access: Public
Diseases: Brain Neoplasms, Breast Neoplasms, Neoplasms
Dataset link The Sweden Canceromics Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine [microarrays]

Experimental Protocol


55 RNA samples (49 tumors, 6 as technical replicates) were sequenced (Illumina paired-end) and in parallel analyzed on Human HT12 v4 BeadChip microarrays following the manufacturer’s standard protocol (Illumina). Intrinsic subtypes were determined for both platforms using the gene lists PAM50, Sorlie and Hu. Mutation calling was performed on the RNA-seq data.

Repositories


GEO

GSE60785

BioProject

PRJNA259545

Download


Contact


Lao Saal

Dataset Statistics

info

Citations per year

Dataset publication