|Application:||Gene expression microarray analysis|
|Number of samples:||55|
|Release date:||Dec 31 2014|
|Last update date:||Aug 13 2018|
|Diseases:||Brain Neoplasms, Breast Neoplasms, Neoplasms|
|Dataset link||The Sweden Canceromics Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine [microarrays]|
55 RNA samples (49 tumors, 6 as technical replicates) were sequenced (Illumina paired-end) and in parallel analyzed on Human HT12 v4 BeadChip microarrays following the manufacturer’s standard protocol (Illumina). Intrinsic subtypes were determined for both platforms using the gene lists PAM50, Sorlie and Hu. Mutation calling was performed on the RNA-seq data.