Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 4
Release date: Nov 30 2009
Last update date: Aug 23 2018
Access: Public
Diseases: Carcinoma, Hepatocellular, Neoplasms, Antiphospholipid Syndrome
Dataset link The anti-angiogenic and anti-tumor cell signaling networks of the kringle 1 domain of hepatocyte growth factor (HGFK1)

Experimental Protocol


Microarray probe sets which were at least 2-fold changed upon rAAV-HGFK1 treatment when compared to rAAV-EGFP (baseline control) treatment on the cells are considered as differentially expressed genes (DEGs). The differentially expressed genes were analyzed using two software tools, namely PathwayArchitect (version 1.0.0) (www.strategene.com) and Ingenity Pathways Analysis (version 5.0) (http://www.ingenuity.com/index.html). They are designed to assist microarray data analysis and provide visualization of biological pathways, gene regulation networks and protein-protein interactions to users. The signaling networks proposed above were manually determined and created based on the relevant findings in literature provided by the software tools.

Repositories


GEO

GSE10854

ArrayExpress

E-GEOD-10854

BioProject

PRJNA107351

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