Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 39
Release date: Dec 31 2013
Last update date: Apr 2 2014
Access: Public
Diseases: Anemia, Iron-Deficiency
Chemicals: Cadmium, Iron
Dataset link Spatial transcriptomes of iron-deficient and cadmium-stressed rice

Experimental Protocol


We performed comprehensive microarray analysis of a rice root using laser microdissection and collected a total of 13 samples (3 replicates for each sample, 39 total microarray data). Roots of normal, Fe-deficient (-Fe) and Cd-stressed (+Cd) rice were separated into the vascular bundle (VB), cortex (Cor), and epidermis plus exodermis (EP). In addition, vascular bundles from new leaves (newDC) and old leaves (oldDC) at the lowest node, which are important for metal distribution, were separately analyzed.

Repositories


GEO

GSE40549

ArrayExpress

E-GEOD-40549

BioProject

PRJNA174253

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Contact


Naoko Nishizawa
Naoko K Nishizawa