Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 17
Release date: Aug 16 2017
Last update date: Jan 24 2018
Access: Public
Taxon: Mycobacterium tuberculosis, Acropora digitifera, Chromera velia, Homo sapiens
Dataset link Deciphering the nature of the coral-Chromera association

Experimental Protocol


The goal of the study is to determine the nature of the coral-Chromera association based on host transcriptional response post-Chromera infection.There were 2 conditions (Chromera-infected and control). Samples were taken at 3 time points post-Chromera infection; 4h, 12h and 48h. There were 3 biological replicates per condition. RNA was isolated and 17 RNA-Seq libraries were sequenced on Illumina Hi-Seq 2000 platform. Samples were analysed to infer differential gene expression, comparing the Chromera-infected samples to the control ones at each time point

Repositories


GEO

GSE102664

ENA

SRP115457

BioProject

PRJNA398338

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Contact


Amin Mohamed