Computational protocol: The histone demethylase PHF8 is a molecular safeguard of the IFNγ response

Similar protocols

Protocol publication

[…] Accession numbers can be found in . In brief, reads were mapped to the hg19 genome version using TOPHAT package (). Transcript levels were calculated with Cufflink () and differentially expressed genes were identify with Cuffdiff (). […]

Pipeline specifications

Software tools TopHat, Cufflinks
Application RNA-seq analysis