BAC specifications

Information


Unique identifier OMICS_00801
Name BAC
Alternative name Bayesian analysis of ChIP-chip
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.40.0
Stability Stable
Requirements
R(>=2.10)
Maintained Yes

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Documentation


Publications for Bayesian analysis of ChIP-chip

BAC in publications

 (2)
PMCID: 2779819
PMID: 19857265
DOI: 10.1186/1471-2105-10-352

[…] essentially a mixture of normal distributions, and models the spatial structure of the probes using a gaussian intrinsic auto-regression model []. gottardo [] developed a software for the model, bayesian analysis of chip-chip (or bac for short). using bac [] does not need extra experimental information, but it is extremely slow, roughly 10 hours for a dataset with 300,000 probes […]

PMCID: 2700807
PMID: 19500407
DOI: 10.1186/1471-2105-10-173

[…] [], and it assumes at most one peak per genomic region, so that the genome has to be partitioned (often arbitrarily) into smaller regions before applying hgmm. gottardo et. al.'s method [], bac (bayesian analysis of chip-chip), is based on approaches used for gene expression studies [] with some additional modifications to exploit the spatial dependence between neighboring probes […]


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BAC institution(s)
Department of Statistics, University of British Columbia, Vancouver, BC, Canada; Dana-Farber Cancer Institute, Harvard School of Public Health, Boston, MA, USA
BAC funding source(s)
This work was funded by NIH grant 1R01 HG004069-01.

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