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BacDive specifications

Information


Unique identifier OMICS_10161
Name BacDive
Alternative name Bacterial Diversity Metadatabase
Restrictions to use None
Maintained Yes

Maintainer


  • person_outline Carola Söhngen

Publications for Bacterial Diversity Metadatabase

BacDive citations

 (4)
library_books

Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA

2017
PLoS One
PMCID: 5598986
PMID: 28910383
DOI: 10.1371/journal.pone.0184722

[…] quences were built from the bacterial species with known OGTs. We obtained 729 prokaryote species with OGTs compiled by Lobry and Necsulea [] and 131 extremophile species with OGTs available from the BacDive metadatabase []. The scientific names of these species were mapped to NCBI’s taxon identifiers (taxids) []. After limiting to bacterial species and only one strain per species, we obtained 536 […]

library_books

The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection

2015
Nucleic Acids Res
PMCID: 4702933
PMID: 26740669
DOI: 10.1093/nar/gkv1356

[…] metabolomics data, including metabolite standards, protocols, tutorials and analysis tools.Coverage of organismal genome diversity is provided by the updated Ensembl Genomes and Bacterial Diversity (BacDive) databases (,), as well as specialized resources dedicated to Caulobacter, Pseudomonas and Bacillus subtilis (–). The current issue also includes updates on popular metagenomics resources, suc […]

library_books

Databases for Microbiologists

2015
J Bacteriol
PMCID: 4505447
PMID: 26013493
DOI: 10.1128/JB.00330-15

[…] large collection of regular and explorative rRNA-targeted probes (), and the rRNA operon copy number (rrnDB) database provides a means to interpret rRNA gene abundance in bacteria and archaea ().The Bacterial Diversity Metadatabase (BacDive) contains detailed information on various aspects of more than 20,000 strains of bacteria and archaea, which includes taxonomy, physiology, sampling, and envi […]

library_books

The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection

2013
Nucleic Acids Res
PMCID: 3965027
PMID: 24316579
DOI: 10.1093/nar/gkt1282

[…] ially sequenced microbial genomes makes particularly important their proper classification, which increasingly relies on such resources as the Ribosomal Database Project (RDP), the Silva/LTP project, BacDive at the DSMZ-German Collection of Microorganisms and Cell Cultures and the List of Prokaryotic Names with Standing in Nomenclature (LPSN) (). The new MetaRef database collects from reference mi […]

Citations

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BacDive institution(s)
Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
BacDive funding source(s)
Deutsche Forschungsgemeinschaft (DFG); German Federation for Biological Data (GFBio) [OV 20/20–1]

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