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|Alternative name||Bacterial Diversity Metadatabase|
|Restrictions to use||None|
- person_outline Carola Söhngen
Publications for Bacterial Diversity Metadatabase
Structural signatures of thermal adaptation of bacterial ribosomal RNA, transfer RNA, and messenger RNA
[…] quences were built from the bacterial species with known OGTs. We obtained 729 prokaryote species with OGTs compiled by Lobry and Necsulea  and 131 extremophile species with OGTs available from the BacDive metadatabase . The scientific names of these species were mapped to NCBI’s taxon identifiers (taxids) . After limiting to bacterial species and only one strain per species, we obtained 536 […]
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection
[…] metabolomics data, including metabolite standards, protocols, tutorials and analysis tools.Coverage of organismal genome diversity is provided by the updated Ensembl Genomes and Bacterial Diversity (BacDive) databases (,), as well as specialized resources dedicated to Caulobacter, Pseudomonas and Bacillus subtilis (–). The current issue also includes updates on popular metagenomics resources, suc […]
Databases for Microbiologists
[…] large collection of regular and explorative rRNA-targeted probes (), and the rRNA operon copy number (rrnDB) database provides a means to interpret rRNA gene abundance in bacteria and archaea ().The Bacterial Diversity Metadatabase (BacDive) contains detailed information on various aspects of more than 20,000 strains of bacteria and archaea, which includes taxonomy, physiology, sampling, and envi […]
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection
[…] ially sequenced microbial genomes makes particularly important their proper classification, which increasingly relies on such resources as the Ribosomal Database Project (RDP), the Silva/LTP project, BacDive at the DSMZ-German Collection of Microorganisms and Cell Cultures and the List of Prokaryotic Names with Standing in Nomenclature (LPSN) (). The new MetaRef database collects from reference mi […]
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