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Protocols

BaCelLo specifications

Information


Unique identifier OMICS_01616
Name BaCelLo
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Rita Casadio
  • person_outline Pier Luigi Martelli
  • person_outline Piero Fariselli
  • person_outline Andrea Pierleoni

Publication for BaCelLo

BaCelLo citations

 (41)
library_books

Genome Wide Identification of the Alba Gene Family in Plants and Stress Responsive Expression of the Rice Alba Genes

2018
Genes
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] The subcellular localization was analyzed in silico using BaCelLo [], ESLPred [], YLoc [], PSORT II [], LocTree3 [], WoLF PSORT [], Plant-mPLoc [], and CELLO []. The NCBI database was used to retrieve a 1500-bp DNA sequence from the 5′-upstream region of eac […]

library_books

Genome wide identification and role of MKK and MPK gene families in clubroot resistance of Brassica rapa

2018
PLoS One
PMCID: 5812557
PMID: 29444111
DOI: 10.1371/journal.pone.0191015

[…] he Compute pI/Mw tool of ExPASy (http://web.expasy.org/compute_pi/). Their subcellular locations were predicted using TargetP and PProwler in WoLF PSORT (http://www.genscript.com/wolf-psort.html) and BaCelLo (http://gpcr.biocomp.unibo.it/bacello/pred.htm). […]

library_books

Identifying Potential Plasmodium vivax Sporozoite Stage Vaccine Candidates: An Analysis of Genetic Diversity and Natural Selection

2018
Front Genet
PMCID: 5788960
PMID: 29422913
DOI: 10.3389/fgene.2018.00010

[…] quences were used for in silico characterization using several bioinformatics tools. SignalP (Nielsen, ) and Phobius (Kall et al., ) predictors were used for ascertaining signal peptide presence; the BaCelLo algorithm (Pierleoni et al., ) was used for predicting antigen location. Transmembrane and/or GPI domains were evaluated with Phobius, TMHMM (Sonnhammer et al., ) and GPI-SOM (Fankhauser and M […]

library_books

The Role of the S40 Gene Family in Leaf Senescence

2017
Int J Mol Sci
PMCID: 5666833
PMID: 29035318
DOI: 10.3390/ijms18102152

[…] h the HvS40-GUS fusion construct [].The putative subcellular localization of S40 proteins in rice was predicted using the publicly available web services YLoc, WoLF PSORT, DISTILL 2.0, LOCALIZER 1.0, BaCelLo and Euk-mPLoc-2.0. A dominant number of prediction programs predicted the localization of OsS40-1, OsS40-2, OsS40-3, OsS40-5, OsS40-6, OsS40-7, OsS40-9, OsS40-14 and OsS40-16 in the nucleus wh […]

library_books

Molecular cloing and bioinformatics analysis of lactate dehydrogenase from Taenia multiceps

2017
PMCID: 5599447
PMID: 28766153
DOI: 10.1007/s00436-017-5568-x

[…] SignalP (http://www.cbs.dtu.dk/Services/SignalP/); transmembrane regions were predicted by the TMHMM2.0 server (http://www.cbs.dtu.dk/services/TMHMM-2.0); subcellular localizations were predicted by BaCelLo (http://gpcr.biocomp.unibo.it/bacello/pred.htm); B-cell epitopes were predicted by the BepiPred 1.0b server (http://www.cbs.dtu.dk/services/BepiPred/); Swiss-model (http://swissmodel.expasy.or […]

library_books

Characterising PvRBSA: an exclusive protein from Plasmodium species infecting reticulocytes

2017
PMCID: 5437689
PMID: 28521840
DOI: 10.1186/s13071-017-2185-6

[…] ominent expression of the codifying genes > 35 h post-invasion (required) according to transcriptome study of the P. vivax intra-erythrocyte life-cycle []; a positive prediction by SignalP 4.1 [] and BaCelLo [] of a secretion signal sequence and extracellular localisation, respectively; the presence (or not) of a GPI anchor sequence using FragAnchor software [], as well as the presence of repeats […]

Citations

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BaCelLo institution(s)
Biocomputing Group, Department of Biology University of Bologna, Bologna, Italy
BaCelLo funding source(s)
Supported by grants: PNR 2001- 2003 (FIRB art.8) for a project on Bioinformatics for Genomics and Proteomics, a FIRB 2003 LIBI—International Laboratory of Bioinformatics, the support to the Bologna node of the Biosapiens Network of Excellence project within the European Union’s VI Framework Programme (contract number LSHG-CT-2003-503265), MIUR for a grant on Proteases and a FIRB 2003-LIBI grant.

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