BaCelLo statistics

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BaCelLo specifications

Information


Unique identifier OMICS_01616
Name BaCelLo
Interface Web user interface
Restrictions to use None
Input format FASTA
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Rita Casadio <>
  • person_outline Pier Luigi Martelli <>
  • person_outline Piero Fariselli <>
  • person_outline Andrea Pierleoni <>

Publication for BaCelLo

BaCelLo in publications

 (33)
PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] phylogenetic tree []. the statistical significance for each tree node was determined by bootstrap analysis using 100 replicates []., the subcellular localization was analyzed in silico using bacello [], eslpred [], yloc [], psort ii [], loctree3 [], wolf psort [], plant-mploc [], and cello []. the ncbi database was used to retrieve a 1500-bp dna sequence from the 5′-upstream region […]

PMCID: 5812557
PMID: 29444111
DOI: 10.1371/journal.pone.0191015

[…] compute pi/mw tool of expasy (http://web.expasy.org/compute_pi/). their subcellular locations were predicted using targetp and pprowler in wolf psort (http://www.genscript.com/wolf-psort.html) and bacello (http://gpcr.biocomp.unibo.it/bacello/pred.htm)., the exon/intron structures of bramkk and brampk genes were analyzed by their coding sequences with corresponding genomic sequences […]

PMCID: 5666833
PMID: 29035318
DOI: 10.3390/ijms18102152

[…] hvs40-gus fusion construct []., the putative subcellular localization of s40 proteins in rice was predicted using the publicly available web services yloc, wolf psort, distill 2.0, localizer 1.0, bacello and euk-mploc-2.0. a dominant number of prediction programs predicted the localization of oss40-1, oss40-2, oss40-3, oss40-5, oss40-6, oss40-7, oss40-9, oss40-14 and oss40-16 in the nucleus […]

PMCID: 5599447
PMID: 28766153
DOI: 10.1007/s00436-017-5568-x

[…] signalp (http://www.cbs.dtu.dk/services/signalp/); transmembrane regions were predicted by the tmhmm2.0 server (http://www.cbs.dtu.dk/services/tmhmm-2.0); subcellular localizations were predicted by bacello (http://gpcr.biocomp.unibo.it/bacello/pred.htm); b-cell epitopes were predicted by the bepipred 1.0b server (http://www.cbs.dtu.dk/services/bepipred/); swiss-model […]

PMCID: 5737547
PMID: 28338826
DOI: 10.1093/dnares/dsx006

[…] (november 2016, date last accessed)), respectively. for the nuclear rps16 genes, presence in mature proteins of a signal peptide targeting the proteins to the organelles was tested using bacello, proteinprowler, targetp, multiloc2 and predotar. in addition, as the chloroplast rps16 gene has a subgroup iib intron, we looked for the presence of the correct splicing of this intron […]


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BaCelLo institution(s)
Biocomputing Group, Department of Biology University of Bologna, Bologna, Italy
BaCelLo funding source(s)
Supported by grants: PNR 2001- 2003 (FIRB art.8) for a project on Bioinformatics for Genomics and Proteomics, a FIRB 2003 LIBI—International Laboratory of Bioinformatics, the support to the Bologna node of the Biosapiens Network of Excellence project within the European Union’s VI Framework Programme (contract number LSHG-CT-2003-503265), MIUR for a grant on Proteases and a FIRB 2003-LIBI grant.

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