BACH-MIX specifications

Information


Unique identifier OMICS_11388
Name BACH-MIX
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data BACH-MIX takes the 3D chromosomal structure BACH predicted and local genomic features (restriction enzyme cutting frequencies, GC content and sequence uniqueness) as input.
Output data BACH-MIX produces, via MCMC computation, the posterior distribution of the proportion of each mixture component in a cell population.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Requirements
GNU scientific
Maintained Yes

Versioning


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Maintainer


  • person_outline Ming Hu <>

Publication for BACH-MIX

BACH-MIX institution(s)
Department of Statistics, Harvard University, Cambridge, MA, USA; Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, GA, USA; Ludwig Institute for Cancer Research, La Jolla, CA, USA; Medical Scientist Training Program, University of California, San Diego, La Jolla, CA, USA; Biomedical Sciences Graduate Program, University of California, San Diego, La Jolla, CA, USA; Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, USA; University of California, San Diego School of Medicine, Department of Cellular and Molecular Medicine, Institute of Genomic Medicine, UCSD Moores Cancer Center, La Jolla, CA, USA
BACH-MIX funding source(s)
This work was supported by the Ludwig Institute for Cancer Research, US National Institutes of Health grants R01HG005119, R01HG003991 and 5R01GM080625.

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